:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-gosorensen'
.. highlight: bash

bioconductor-gosorensen
=======================

.. conda:recipe:: bioconductor-gosorensen
   :replaces_section_title:
   :noindex:

   Statistical inference based on the Sorensen\-Dice dissimilarity and the Gene Ontology \(GO\)

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/goSorensen.html
   :license: GPL-3
   :recipe: /`bioconductor-gosorensen <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gosorensen>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gosorensen/meta.yaml>`_

   This package implements inferential methods to compare gene lists in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross\-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen\-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.


.. conda:package:: bioconductor-gosorensen

   |downloads_bioconductor-gosorensen| |docker_bioconductor-gosorensen|

   :versions:
      
      

      ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-clusterprofiler: ``>=4.10.0,<4.11.0``
   :depends bioconductor-go.db: ``>=3.18.0,<3.19.0``
   :depends bioconductor-goprofiles: ``>=1.64.0,<1.65.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.18.0,<3.19.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-stringr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-gosorensen

   and update with::

      mamba update bioconductor-gosorensen

  To create a new environment, run::

      mamba create --name myenvname bioconductor-gosorensen

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-gosorensen:<tag>

   (see `bioconductor-gosorensen/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-gosorensen| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gosorensen.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-gosorensen
   :alt:   (downloads)
.. |docker_bioconductor-gosorensen| image:: https://quay.io/repository/biocontainers/bioconductor-gosorensen/status
   :target: https://quay.io/repository/biocontainers/bioconductor-gosorensen
.. _`bioconductor-gosorensen/tags`: https://quay.io/repository/biocontainers/bioconductor-gosorensen?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-gosorensen";
        var versions = ["1.4.0","1.2.0","1.0.0"];
    </script>






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-----------------

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    :file: ../../templates/package_dashboard.html

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