:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gse159526' .. highlight: bash bioconductor-gse159526 ====================== .. conda:recipe:: bioconductor-gse159526 :replaces_section_title: :noindex: Placental cell DNA methylation data from GEO accession GSE159526 :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/GSE159526.html :license: MIT + file LICENSE :recipe: /`bioconductor-gse159526 `_/`meta.yaml `_ 19 term and 9 first trimester placental chorionic villi and matched cell\-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession \[GSE159526\]\(https\:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi\?acc\=GSE159526\). Both the raw and processed data has been made available on \\code\{ExperimentHub\}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \\code\{matrix\}\, with a corresponding phenotype information as a \\code\{data.frame\} object. .. conda:package:: bioconductor-gse159526 |downloads_bioconductor-gse159526| |docker_bioconductor-gse159526| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.3.0-0``,  ``1.0.0-1``,  ``1.0.0-0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gse159526 and update with:: mamba update bioconductor-gse159526 To create a new environment, run:: mamba create --name myenvname bioconductor-gse159526 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gse159526: (see `bioconductor-gse159526/tags`_ for valid values for ````) .. |downloads_bioconductor-gse159526| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gse159526.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gse159526 :alt: (downloads) .. |docker_bioconductor-gse159526| image:: https://quay.io/repository/biocontainers/bioconductor-gse159526/status :target: https://quay.io/repository/biocontainers/bioconductor-gse159526 .. _`bioconductor-gse159526/tags`: https://quay.io/repository/biocontainers/bioconductor-gse159526?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gse159526/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gse159526/README.html