:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-gviz'
.. highlight: bash

bioconductor-gviz
=================

.. conda:recipe:: bioconductor-gviz
   :replaces_section_title:
   :noindex:

   Plotting data and annotation information along genomic coordinates

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/Gviz.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-gviz <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gviz>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gviz/meta.yaml>`_
   :links: biotools: :biotools:`gviz`

   Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene\/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.


.. conda:package:: bioconductor-gviz

   |downloads_bioconductor-gviz| |docker_bioconductor-gviz|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.38.0-0</code>,  <code>1.36.1-0</code>,  <code>1.34.1-0</code>,  <code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.30.0-0</code>,  <code>1.28.0-1</code>,  <code>1.26.4-0</code>,  <code>1.24.0-0</code>,  </span></summary>
      

      ``1.38.0-0``,  ``1.36.1-0``,  ``1.34.1-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.26.4-0``,  ``1.24.0-0``,  ``1.22.3-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.16.5-2``,  ``1.14.2-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0``
   :depends bioconductor-biobase: ``>=2.54.0,<2.55.0``
   :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0``
   :depends bioconductor-biomart: ``>=2.50.0,<2.51.0``
   :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biovizbase: ``>=1.42.0,<1.43.0``
   :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0``
   :depends bioconductor-ensembldb: ``>=2.18.0,<2.19.0``
   :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0``
   :depends bioconductor-genomicalignments: ``>=1.30.0,<1.31.0``
   :depends bioconductor-genomicfeatures: ``>=1.46.0,<1.47.0``
   :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0``
   :depends bioconductor-iranges: ``>=2.28.0,<2.29.0``
   :depends bioconductor-rsamtools: ``>=2.10.0,<2.11.0``
   :depends bioconductor-rtracklayer: ``>=1.54.0,<1.55.0``
   :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0``
   :depends bioconductor-xvector: ``>=0.34.0,<0.35.0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-digest: ``>=0.6.8``
   :depends r-lattice: 
   :depends r-latticeextra: ``>=0.6-26``
   :depends r-matrixstats: ``>=0.8.14``
   :depends r-rcolorbrewer: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-gviz

   and update with::

      conda update bioconductor-gviz

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-gviz:<tag>

   (see `bioconductor-gviz/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-gviz| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gviz.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-gviz
   :alt:   (downloads)
.. |docker_bioconductor-gviz| image:: https://quay.io/repository/biocontainers/bioconductor-gviz/status
   :target: https://quay.io/repository/biocontainers/bioconductor-gviz
.. _`bioconductor-gviz/tags`: https://quay.io/repository/biocontainers/bioconductor-gviz?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-gviz";
        var versions = ["1.38.0","1.36.1","1.34.1","1.34.0","1.32.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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