:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-highlyreplicatedrnaseq' .. highlight: bash bioconductor-highlyreplicatedrnaseq =================================== .. conda:recipe:: bioconductor-highlyreplicatedrnaseq :replaces_section_title: :noindex: Collection of Bulk RNA\-Seq Experiments With Many Replicates :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/HighlyReplicatedRNASeq.html :license: MIT + file LICENSE :recipe: /`bioconductor-highlyreplicatedrnaseq `_/`meta.yaml `_ Gene\-level count matrix data for bulk RNA\-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https\:\/\/github.com\/bartongroup\/profDGE48. .. conda:package:: bioconductor-highlyreplicatedrnaseq |downloads_bioconductor-highlyreplicatedrnaseq| |docker_bioconductor-highlyreplicatedrnaseq| :versions: ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-highlyreplicatedrnaseq and update with:: mamba update bioconductor-highlyreplicatedrnaseq To create a new environment, run:: mamba create --name myenvname bioconductor-highlyreplicatedrnaseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-highlyreplicatedrnaseq: (see `bioconductor-highlyreplicatedrnaseq/tags`_ for valid values for ````) .. |downloads_bioconductor-highlyreplicatedrnaseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-highlyreplicatedrnaseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-highlyreplicatedrnaseq :alt: (downloads) .. |docker_bioconductor-highlyreplicatedrnaseq| image:: https://quay.io/repository/biocontainers/bioconductor-highlyreplicatedrnaseq/status :target: https://quay.io/repository/biocontainers/bioconductor-highlyreplicatedrnaseq .. _`bioconductor-highlyreplicatedrnaseq/tags`: https://quay.io/repository/biocontainers/bioconductor-highlyreplicatedrnaseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-highlyreplicatedrnaseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-highlyreplicatedrnaseq/README.html