:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-hilda' .. highlight: bash bioconductor-hilda ================== .. conda:recipe:: bioconductor-hilda :replaces_section_title: :noindex: Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation :homepage: https://bioconductor.org/packages/3.12/bioc/html/HiLDA.html :license: GPL-3 :recipe: /`bioconductor-hilda `_/`meta.yaml `_ A package built under the Bayesian framework of applying hierarchical latent Dirichlet allocation to statistically test whether the mutational exposures of mutational signatures \(Shiraishi\-model signatures\) are different between two groups. .. conda:package:: bioconductor-hilda |downloads_bioconductor-hilda| |docker_bioconductor-hilda| :versions: ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocgenerics: ``>=0.36.0,<0.37.0`` :depends bioconductor-biostrings: ``>=2.58.0,<2.59.0`` :depends bioconductor-bsgenome.hsapiens.ucsc.hg19: ``>=1.4.0,<1.5.0`` :depends bioconductor-genomicfeatures: ``>=1.42.0,<1.43.0`` :depends bioconductor-genomicranges: ``>=1.42.0,<1.43.0`` :depends bioconductor-s4vectors: ``>=0.28.0,<0.29.0`` :depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene: ``>=3.2.0,<3.3.0`` :depends bioconductor-xvector: ``>=0.30.0,<0.31.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=7.5.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=7.5.0`` :depends r-abind: :depends r-base: ``>=4.0,<4.1.0a0`` :depends r-cowplot: :depends r-forcats: :depends r-ggplot2: :depends r-r2jags: :depends r-rcpp: :depends r-stringr: :depends r-tidyr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-hilda and update with:: conda update bioconductor-hilda or use the docker container:: docker pull quay.io/biocontainers/bioconductor-hilda: (see `bioconductor-hilda/tags`_ for valid values for ````) .. |downloads_bioconductor-hilda| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-hilda.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-hilda :alt: (downloads) .. |docker_bioconductor-hilda| image:: https://quay.io/repository/biocontainers/bioconductor-hilda/status :target: https://quay.io/repository/biocontainers/bioconductor-hilda .. _`bioconductor-hilda/tags`: https://quay.io/repository/biocontainers/bioconductor-hilda?tab=tags Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hilda/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-hilda/README.html