:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-icheck' .. highlight: bash bioconductor-icheck =================== .. conda:recipe:: bioconductor-icheck :replaces_section_title: :noindex: QC Pipeline and Data Analysis Tools for High\-Dimensional Illumina mRNA Expression Data :homepage: https://bioconductor.org/packages/3.14/bioc/html/iCheck.html :license: GPL (>= 2) :recipe: /`bioconductor-icheck `_/`meta.yaml `_ QC pipeline and data analysis tools for high\-dimensional Illumina mRNA expression data. .. conda:package:: bioconductor-icheck |downloads_bioconductor-icheck| |docker_bioconductor-icheck| :versions: ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.12.0-0`` :depends bioconductor-affy: ``>=1.72.0,<1.73.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-geneselectmmd: ``>=2.38.0,<2.39.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-lumi: ``>=2.46.0,<2.47.0`` :depends bioconductor-preprocesscore: ``>=1.56.0,<1.57.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-gplots: :depends r-lmtest: :depends r-mass: :depends r-randomforest: :depends r-rgl: :depends r-scatterplot3d: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-icheck and update with:: conda update bioconductor-icheck or use the docker container:: docker pull quay.io/biocontainers/bioconductor-icheck: (see `bioconductor-icheck/tags`_ for valid values for ````) .. |downloads_bioconductor-icheck| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-icheck.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-icheck :alt: (downloads) .. |docker_bioconductor-icheck| image:: https://quay.io/repository/biocontainers/bioconductor-icheck/status :target: https://quay.io/repository/biocontainers/bioconductor-icheck .. _`bioconductor-icheck/tags`: https://quay.io/repository/biocontainers/bioconductor-icheck?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-icheck/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-icheck/README.html