:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-immunespacer' .. highlight: bash bioconductor-immunespacer ========================= .. conda:recipe:: bioconductor-immunespacer :replaces_section_title: :noindex: A Thin Wrapper around the ImmuneSpace Data and Tools Portal :homepage: https://bioconductor.org/packages/3.18/bioc/html/ImmuneSpaceR.html :license: GPL-2 :recipe: /`bioconductor-immunespacer `_/`meta.yaml `_ Provides a convenient API for accessing data sets within ImmuneSpace Data and Tools Portal \(datatools.immunespace.org\)\, the data repository and analysis platform of the Human Immunology Project Consortium \(HIPC\). .. conda:package:: bioconductor-immunespacer |downloads_bioconductor-immunespacer| |docker_bioconductor-immunespacer| :versions: .. raw:: html
1.30.0-01.28.0-01.26.0-01.22.0-01.20.0-01.18.1-01.18.0-01.16.0-01.14.0-0 ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.1-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.2-0``,  ``1.10.5-0``,  ``1.10.1-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-flowcore: ``>=2.14.0,<2.15.0`` :depends bioconductor-flowworkspace: ``>=4.14.0,<4.15.0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-curl: :depends r-data.table: :depends r-digest: :depends r-ggplot2: ``>=3.2.0`` :depends r-gplots: :depends r-heatmaply: ``>=0.7.0`` :depends r-httr: :depends r-jsonlite: :depends r-pheatmap: :depends r-plotly: :depends r-r6: :depends r-rlabkey: ``>=2.3.1`` :depends r-rmarkdown: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-immunespacer and update with:: mamba update bioconductor-immunespacer To create a new environment, run:: mamba create --name myenvname bioconductor-immunespacer with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-immunespacer: (see `bioconductor-immunespacer/tags`_ for valid values for ````) .. |downloads_bioconductor-immunespacer| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-immunespacer.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-immunespacer :alt: (downloads) .. |docker_bioconductor-immunespacer| image:: https://quay.io/repository/biocontainers/bioconductor-immunespacer/status :target: https://quay.io/repository/biocontainers/bioconductor-immunespacer .. _`bioconductor-immunespacer/tags`: https://quay.io/repository/biocontainers/bioconductor-immunespacer?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-immunespacer/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-immunespacer/README.html