:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-infercnv' .. highlight: bash bioconductor-infercnv ===================== .. conda:recipe:: bioconductor-infercnv :replaces_section_title: :noindex: Infer Copy Number Variation from Single\-Cell RNA\-Seq Data :homepage: https://bioconductor.org/packages/3.14/bioc/html/infercnv.html :license: BSD_3_clause + file LICENSE :recipe: /`bioconductor-infercnv `_/`meta.yaml `_ Using single\-cell RNA\-Seq expression to visualize CNV in cells. .. conda:package:: bioconductor-infercnv |downloads_bioconductor-infercnv| |docker_bioconductor-infercnv| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.3-0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-singlecellexperiment: ``>=1.16.0,<1.17.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends jags: ``4.*.*`` :depends r-ape: :depends r-argparse: :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-catools: :depends r-coda: :depends r-coin: :depends r-digest: :depends r-doparallel: :depends r-dplyr: :depends r-fastcluster: :depends r-fitdistrplus: :depends r-foreach: :depends r-futile.logger: :depends r-future: :depends r-ggplot2: :depends r-gplots: :depends r-gridextra: :depends r-hiddenmarkov: :depends r-leiden: :depends r-matrix: :depends r-phyclust: :depends r-rann: :depends r-rcolorbrewer: :depends r-reshape: :depends r-rjags: :depends r-tidyr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-infercnv and update with:: conda update bioconductor-infercnv or use the docker container:: docker pull quay.io/biocontainers/bioconductor-infercnv: (see `bioconductor-infercnv/tags`_ for valid values for ````) .. |downloads_bioconductor-infercnv| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-infercnv.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-infercnv :alt: (downloads) .. |docker_bioconductor-infercnv| image:: https://quay.io/repository/biocontainers/bioconductor-infercnv/status :target: https://quay.io/repository/biocontainers/bioconductor-infercnv .. _`bioconductor-infercnv/tags`: https://quay.io/repository/biocontainers/bioconductor-infercnv?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-infercnv/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-infercnv/README.html