:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-interactionset' .. highlight: bash bioconductor-interactionset =========================== .. conda:recipe:: bioconductor-interactionset :replaces_section_title: :noindex: Base Classes for Storing Genomic Interaction Data :homepage: https://bioconductor.org/packages/3.20/bioc/html/InteractionSet.html :license: GPL-3 :recipe: /`bioconductor-interactionset `_/`meta.yaml `_ :links: biotools: :biotools:`interactionset` Provides the GInteractions\, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi\-C and ChIA\-PET experiments. .. conda:package:: bioconductor-interactionset |downloads_bioconductor-interactionset| |docker_bioconductor-interactionset| :versions: .. raw:: html
1.34.0-01.30.0-11.30.0-01.28.1-01.26.0-11.26.0-01.22.0-21.22.0-11.22.0-0 ``1.34.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.1-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.22.0-2``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0a0`` :depends bioconductor-genomeinfodb: ``>=1.42.0,<1.43.0`` :depends bioconductor-genomeinfodb: ``>=1.42.0,<1.43.0a0`` :depends bioconductor-genomicranges: ``>=1.58.0,<1.59.0`` :depends bioconductor-genomicranges: ``>=1.58.0,<1.59.0a0`` :depends bioconductor-iranges: ``>=2.40.0,<2.41.0`` :depends bioconductor-iranges: ``>=2.40.0,<2.41.0a0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0`` :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc: ``>=13`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx: ``>=13`` :depends r-base: ``>=4.4,<4.5.0a0`` :depends r-matrix: :depends r-rcpp: :requirements: :additional platforms: .. raw:: html linux-aarch64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-interactionset and update with:: mamba update bioconductor-interactionset To create a new environment, run:: mamba create --name myenvname bioconductor-interactionset with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-interactionset: (see `bioconductor-interactionset/tags`_ for valid values for ````) .. |downloads_bioconductor-interactionset| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-interactionset.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-interactionset :alt: (downloads) .. |docker_bioconductor-interactionset| image:: https://quay.io/repository/biocontainers/bioconductor-interactionset/status :target: https://quay.io/repository/biocontainers/bioconductor-interactionset .. _`bioconductor-interactionset/tags`: https://quay.io/repository/biocontainers/bioconductor-interactionset?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactionset/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-interactionset/README.html