:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-isobar' .. highlight: bash bioconductor-isobar =================== .. conda:recipe:: bioconductor-isobar :replaces_section_title: :noindex: Analysis and quantitation of isobarically tagged MSMS proteomics data :homepage: https://bioconductor.org/packages/3.18/bioc/html/isobar.html :license: LGPL-2 :recipe: /`bioconductor-isobar `_/`meta.yaml `_ isobar provides methods for preprocessing\, normalization\, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags\, such as iTRAQ and TMT. Features modules for integrating and validating PTM\-centric datasets \(isobar\-PTM\). More information on http\:\/\/www.ms\-isobar.org. .. conda:package:: bioconductor-isobar |downloads_bioconductor-isobar| |docker_bioconductor-isobar| :versions: .. raw:: html
1.48.0-01.46.0-01.44.0-01.40.0-01.38.0-01.36.0-11.36.0-01.34.0-01.32.0-0 ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.28.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biomart: ``>=2.58.0,<2.59.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-distr: :depends r-ggplot2: :depends r-plyr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-isobar and update with:: mamba update bioconductor-isobar To create a new environment, run:: mamba create --name myenvname bioconductor-isobar with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-isobar: (see `bioconductor-isobar/tags`_ for valid values for ````) .. |downloads_bioconductor-isobar| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-isobar.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-isobar :alt: (downloads) .. |docker_bioconductor-isobar| image:: https://quay.io/repository/biocontainers/bioconductor-isobar/status :target: https://quay.io/repository/biocontainers/bioconductor-isobar .. _`bioconductor-isobar/tags`: https://quay.io/repository/biocontainers/bioconductor-isobar?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-isobar/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-isobar/README.html