:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-keggorthology' .. highlight: bash bioconductor-keggorthology ========================== .. conda:recipe:: bioconductor-keggorthology :replaces_section_title: :noindex: graph support for KO\, KEGG Orthology :homepage: https://bioconductor.org/packages/3.18/bioc/html/keggorthology.html :license: Artistic-2.0 :recipe: /`bioconductor-keggorthology `_/`meta.yaml `_ :links: biotools: :biotools:`keggorthology`, doi: :doi:`10.1038/nmeth.3252` graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs. .. conda:package:: bioconductor-keggorthology |downloads_bioconductor-keggorthology| |docker_bioconductor-keggorthology| :versions: .. raw:: html
2.54.0-02.52.0-02.50.0-02.46.0-02.44.0-02.42.0-12.42.0-02.40.0-02.38.0-0 ``2.54.0-0``,  ``2.52.0-0``,  ``2.50.0-0``,  ``2.46.0-0``,  ``2.44.0-0``,  ``2.42.0-1``,  ``2.42.0-0``,  ``2.40.0-0``,  ``2.38.0-0``,  ``2.36.0-1``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-hgu95av2.db: ``>=3.13.0,<3.14.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dbi: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-keggorthology and update with:: mamba update bioconductor-keggorthology To create a new environment, run:: mamba create --name myenvname bioconductor-keggorthology with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-keggorthology: (see `bioconductor-keggorthology/tags`_ for valid values for ````) .. |downloads_bioconductor-keggorthology| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-keggorthology.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-keggorthology :alt: (downloads) .. |docker_bioconductor-keggorthology| image:: https://quay.io/repository/biocontainers/bioconductor-keggorthology/status :target: https://quay.io/repository/biocontainers/bioconductor-keggorthology .. _`bioconductor-keggorthology/tags`: https://quay.io/repository/biocontainers/bioconductor-keggorthology?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-keggorthology/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-keggorthology/README.html