:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-limpca'
.. highlight: bash

bioconductor-limpca
===================

.. conda:recipe:: bioconductor-limpca
   :replaces_section_title:
   :noindex:

   An R package for the linear modeling of high\-dimensional designed data based on ASCA\/APCA family of methods

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/limpca.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-limpca <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-limpca>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-limpca/meta.yaml>`_

   This package has for objectives to provide a method to make Linear Models for high\-dimensional designed data. limpca applies a GLM \(General Linear Model\) version of ASCA and APCA to analyse multivariate sample profiles generated by an experimental design. ASCA\/APCA provide powerful visualization tools for multivariate structures in the space of each effect of the statistical model linked to the experimental design and contrarily to MANOVA\, it can deal with mutlivariate datasets having more variables than observations. This method can handle unbalanced design.


.. conda:package:: bioconductor-limpca

   |downloads_bioconductor-limpca| |docker_bioconductor-limpca|

   :versions:
      
      

      ``1.2.0-0``

      

   
   :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0``
   :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0``
   :depends r-base: ``>=4.4,<4.5.0a0``
   :depends r-doparallel: 
   :depends r-dplyr: 
   :depends r-ggplot2: 
   :depends r-ggrepel: 
   :depends r-ggsci: 
   :depends r-plyr: 
   :depends r-reshape2: 
   :depends r-stringr: 
   :depends r-tibble: 
   :depends r-tidyr: 
   :depends r-tidyverse: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-limpca

   and update with::

      mamba update bioconductor-limpca

  To create a new environment, run::

      mamba create --name myenvname bioconductor-limpca

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-limpca:<tag>

   (see `bioconductor-limpca/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-limpca| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-limpca.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-limpca
   :alt:   (downloads)
.. |docker_bioconductor-limpca| image:: https://quay.io/repository/biocontainers/bioconductor-limpca/status
   :target: https://quay.io/repository/biocontainers/bioconductor-limpca
.. _`bioconductor-limpca/tags`: https://quay.io/repository/biocontainers/bioconductor-limpca?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-limpca";
        var versions = ["1.2.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-limpca/README.html