:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-linkhd' .. highlight: bash bioconductor-linkhd =================== .. conda:recipe:: bioconductor-linkhd :replaces_section_title: :noindex: LinkHD\: a versatile framework to explore and integrate heterogeneous data :homepage: https://bioconductor.org/packages/3.18/bioc/html/LinkHD.html :license: GPL-3 :recipe: /`bioconductor-linkhd `_/`meta.yaml `_ Here we present Link\-HD\, an approach to integrate heterogeneous datasets\, as a generalization of STATIS\-ACT \(“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”\)\, a family of methods to join and compare information from multiple subspaces. However\, STATIS\-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints\, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection. .. conda:package:: bioconductor-linkhd |downloads_bioconductor-linkhd| |docker_bioconductor-linkhd| :versions: ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-multiassayexperiment: ``>=1.28.0,<1.29.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cluster: :depends r-data.table: :depends r-emmeans: :depends r-ggplot2: :depends r-ggpubr: :depends r-gridextra: :depends r-reshape2: :depends r-rio: :depends r-scales: :depends r-vegan: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-linkhd and update with:: mamba update bioconductor-linkhd To create a new environment, run:: mamba create --name myenvname bioconductor-linkhd with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-linkhd: (see `bioconductor-linkhd/tags`_ for valid values for ````) .. |downloads_bioconductor-linkhd| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-linkhd.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-linkhd :alt: (downloads) .. |docker_bioconductor-linkhd| image:: https://quay.io/repository/biocontainers/bioconductor-linkhd/status :target: https://quay.io/repository/biocontainers/bioconductor-linkhd .. _`bioconductor-linkhd/tags`: https://quay.io/repository/biocontainers/bioconductor-linkhd?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-linkhd/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-linkhd/README.html