:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-lmdme' .. highlight: bash bioconductor-lmdme ================== .. conda:recipe:: bioconductor-lmdme :replaces_section_title: :noindex: Linear Model decomposition for Designed Multivariate Experiments :homepage: https://bioconductor.org/packages/3.18/bioc/html/lmdme.html :license: GPL (>=2) :recipe: /`bioconductor-lmdme `_/`meta.yaml `_ :links: biotools: :biotools:`lmdme` linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features\: i\)Flexible formula type interface\, ii\) Fast limma based implementation\, iii\) p\-values for each estimated coefficient levels in each factor\, iv\) F values for factor effects and v\) plotting functions for PCA and PLS. .. conda:package:: bioconductor-lmdme |downloads_bioconductor-lmdme| |docker_bioconductor-lmdme| :versions: .. raw:: html
1.44.0-01.42.0-01.40.0-01.36.0-01.34.0-01.32.0-21.32.0-01.30.0-01.28.0-1 ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-2``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0`` .. raw:: html
:depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-stemhypoxia: ``>=1.38.0,<1.39.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-pls: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-lmdme and update with:: mamba update bioconductor-lmdme To create a new environment, run:: mamba create --name myenvname bioconductor-lmdme with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-lmdme: (see `bioconductor-lmdme/tags`_ for valid values for ````) .. |downloads_bioconductor-lmdme| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-lmdme.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-lmdme :alt: (downloads) .. |docker_bioconductor-lmdme| image:: https://quay.io/repository/biocontainers/bioconductor-lmdme/status :target: https://quay.io/repository/biocontainers/bioconductor-lmdme .. _`bioconductor-lmdme/tags`: https://quay.io/repository/biocontainers/bioconductor-lmdme?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lmdme/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-lmdme/README.html