:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-m3drop' .. highlight: bash bioconductor-m3drop =================== .. conda:recipe:: bioconductor-m3drop :replaces_section_title: :noindex: Michaelis\-Menten Modelling of Dropouts in single\-cell RNASeq :homepage: https://bioconductor.org/packages/3.18/bioc/html/M3Drop.html :license: GPL (>=2) :recipe: /`bioconductor-m3drop `_/`meta.yaml `_ :links: biotools: :biotools:`m3drop`, doi: :doi:`10.1002/1873-3468.12684` This package fits a Michaelis\-Menten model to the pattern of dropouts in single\-cell RNASeq data. This model is used as a null to identify significantly variable \(i.e. differentially expressed\) genes for use in downstream analysis\, such as clustering cells. .. conda:package:: bioconductor-m3drop |downloads_bioconductor-m3drop| |docker_bioconductor-m3drop| :versions: .. raw:: html
1.28.0-11.28.0-01.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-0 ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.1-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-bbmle: :depends r-gplots: :depends r-hmisc: :depends r-irlba: :depends r-matrix: :depends r-matrixstats: :depends r-numderiv: :depends r-rcolorbrewer: :depends r-reldist: :depends r-statmod: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-m3drop and update with:: mamba update bioconductor-m3drop To create a new environment, run:: mamba create --name myenvname bioconductor-m3drop with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-m3drop: (see `bioconductor-m3drop/tags`_ for valid values for ````) .. |downloads_bioconductor-m3drop| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-m3drop.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-m3drop :alt: (downloads) .. |docker_bioconductor-m3drop| image:: https://quay.io/repository/biocontainers/bioconductor-m3drop/status :target: https://quay.io/repository/biocontainers/bioconductor-m3drop .. _`bioconductor-m3drop/tags`: https://quay.io/repository/biocontainers/bioconductor-m3drop?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-m3drop/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-m3drop/README.html