:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-masigpro' .. highlight: bash bioconductor-masigpro ===================== .. conda:recipe:: bioconductor-masigpro :replaces_section_title: :noindex: Significant Gene Expression Profile Differences in Time Course Gene Expression Data :homepage: https://bioconductor.org/packages/3.18/bioc/html/maSigPro.html :license: GPL (>= 2) :recipe: /`bioconductor-masigpro `_/`meta.yaml `_ :links: biotools: :biotools:`masigpro`, doi: :doi:`10.1093/bioinformatics/btu333` maSigPro is a regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA\-Seq experiments. .. conda:package:: bioconductor-masigpro |downloads_bioconductor-masigpro| |docker_bioconductor-masigpro| :versions: .. raw:: html
1.74.0-01.72.0-01.70.0-01.66.0-01.64.0-01.62.0-11.62.0-01.60.0-01.58.0-0 ``1.74.0-0``,  ``1.72.0-0``,  ``1.70.0-0``,  ``1.66.0-0``,  ``1.64.0-0``,  ``1.62.0-1``,  ``1.62.0-0``,  ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-1``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.49.4-0``,  ``1.49.3-0``,  ``1.49.0-0``,  ``1.48.0-0``,  ``1.46.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-mass: :depends r-mclust: :depends r-venn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-masigpro and update with:: mamba update bioconductor-masigpro To create a new environment, run:: mamba create --name myenvname bioconductor-masigpro with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-masigpro: (see `bioconductor-masigpro/tags`_ for valid values for ````) .. |downloads_bioconductor-masigpro| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-masigpro.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-masigpro :alt: (downloads) .. |docker_bioconductor-masigpro| image:: https://quay.io/repository/biocontainers/bioconductor-masigpro/status :target: https://quay.io/repository/biocontainers/bioconductor-masigpro .. _`bioconductor-masigpro/tags`: https://quay.io/repository/biocontainers/bioconductor-masigpro?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-masigpro/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-masigpro/README.html