:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-metab'
.. highlight: bash

bioconductor-metab
==================

.. conda:recipe:: bioconductor-metab
   :replaces_section_title:
   :noindex:

   Metab\: An R Package for a High\-Throughput Analysis of Metabolomics Data Generated by GC\-MS.

   :homepage: https://bioconductor.org/packages/3.17/bioc/html/Metab.html
   :license: GPL (>=2)
   :recipe: /`bioconductor-metab <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-metab>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-metab/meta.yaml>`_
   :links: biotools: :biotools:`metab`

   Metab is an R package for high\-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System \(AMDIS\) \(http\:\/\/chemdata.nist.gov\/mass\-spc\/amdis\/downloads\/\). In addition\, it performs statistical hypothesis test \(t\-test\) and analysis of variance \(ANOVA\). Doing so\, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features\, allowing users with lack of R knowledge to appreciate its functionalities.


.. conda:package:: bioconductor-metab

   |downloads_bioconductor-metab| |docker_bioconductor-metab|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.33.0-0</code>,  <code>1.32.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.24.0-1</code>,  <code>1.24.0-0</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.0-1</code>,  </span></summary>
      

      ``1.33.0-0``,  ``1.32.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.16.1-0``,  ``1.12.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-xcms: ``>=3.22.0,<3.23.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-pander: 
   :depends r-svdialogs: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-metab

   and update with::

      mamba update bioconductor-metab

  To create a new environment, run::

      mamba create --name myenvname bioconductor-metab

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-metab:<tag>

   (see `bioconductor-metab/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-metab| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-metab.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-metab
   :alt:   (downloads)
.. |docker_bioconductor-metab| image:: https://quay.io/repository/biocontainers/bioconductor-metab/status
   :target: https://quay.io/repository/biocontainers/bioconductor-metab
.. _`bioconductor-metab/tags`: https://quay.io/repository/biocontainers/bioconductor-metab?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-metab";
        var versions = ["1.33.0","1.32.0","1.28.0","1.26.0","1.24.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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