:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-metaboannotation' .. highlight: bash bioconductor-metaboannotation ============================= .. conda:recipe:: bioconductor-metaboannotation :replaces_section_title: :noindex: Utilities for Annotation of Metabolomics Data :homepage: https://bioconductor.org/packages/3.18/bioc/html/MetaboAnnotation.html :license: Artistic-2.0 :recipe: /`bioconductor-metaboannotation `_/`meta.yaml `_ High level functions to assist in annotation of \(metabolomics\) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m\/z and retention times for annotation of LC\-MS features given that respective reference values are available. In addition\, the function provides high\-level functions to simplify matching of LC\-MS\/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data. .. conda:package:: bioconductor-metaboannotation |downloads_bioconductor-metaboannotation| |docker_bioconductor-metaboannotation| :versions: ``1.6.1-0``,  ``1.4.1-0``,  ``1.2.0-0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-compounddb: ``>=1.6.0,<1.7.0`` :depends bioconductor-metabocoreutils: ``>=1.10.0,<1.11.0`` :depends bioconductor-mscoreutils: ``>=1.14.0,<1.15.0`` :depends bioconductor-protgenerics: ``>=1.34.0,<1.35.0`` :depends bioconductor-qfeatures: ``>=1.12.0,<1.13.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-spectra: ``>=1.12.0,<1.13.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-metaboannotation and update with:: mamba update bioconductor-metaboannotation To create a new environment, run:: mamba create --name myenvname bioconductor-metaboannotation with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-metaboannotation: (see `bioconductor-metaboannotation/tags`_ for valid values for ````) .. |downloads_bioconductor-metaboannotation| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-metaboannotation.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-metaboannotation :alt: (downloads) .. |docker_bioconductor-metaboannotation| image:: https://quay.io/repository/biocontainers/bioconductor-metaboannotation/status :target: https://quay.io/repository/biocontainers/bioconductor-metaboannotation .. _`bioconductor-metaboannotation/tags`: https://quay.io/repository/biocontainers/bioconductor-metaboannotation?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metaboannotation/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-metaboannotation/README.html