:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-methylpipe'
.. highlight: bash

bioconductor-methylpipe
=======================

.. conda:recipe:: bioconductor-methylpipe
   :replaces_section_title:
   :noindex:

   Base resolution DNA methylation data analysis

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/methylPipe.html
   :license: GPL(>=2)
   :recipe: /`bioconductor-methylpipe <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-methylpipe>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-methylpipe/meta.yaml>`_
   :links: biotools: :biotools:`methylpipe`

   Memory efficient analysis of base resolution DNA methylation data in both the CpG and non\-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base\- or low\-resolution data.


.. conda:package:: bioconductor-methylpipe

   |downloads_bioconductor-methylpipe| |docker_bioconductor-methylpipe|

   :versions:
      
      

      ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``

      

   
   :depends bioconductor-biocgenerics: ``>=0.34.0,<0.35.0``
   :depends bioconductor-biostrings: ``>=2.56.0,<2.57.0``
   :depends bioconductor-genomeinfodb: ``>=1.24.0,<1.25.0``
   :depends bioconductor-genomicalignments: ``>=1.24.0,<1.25.0``
   :depends bioconductor-genomicranges: ``>=1.40.0,<1.41.0``
   :depends bioconductor-gviz: ``>=1.32.0,<1.33.0``
   :depends bioconductor-iranges: ``>=2.22.0,<2.23.0``
   :depends bioconductor-marray: ``>=1.66.0,<1.67.0``
   :depends bioconductor-rsamtools: ``>=2.4.0,<2.5.0``
   :depends bioconductor-s4vectors: ``>=0.26.0,<0.27.0``
   :depends bioconductor-summarizedexperiment: ``>=1.18.0,<1.19.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=7.3.0``
   :depends liblapack: ``>=3.8.0,<3.9.0a0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-data.table: 
   :depends r-gplots: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-methylpipe

   and update with::

      conda update bioconductor-methylpipe

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

   (see `bioconductor-methylpipe/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-methylpipe| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-methylpipe.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-methylpipe
   :alt:   (downloads)
.. |docker_bioconductor-methylpipe| image:: https://quay.io/repository/biocontainers/bioconductor-methylpipe/status
   :target: https://quay.io/repository/biocontainers/bioconductor-methylpipe
.. _`bioconductor-methylpipe/tags`: https://quay.io/repository/biocontainers/bioconductor-methylpipe?tab=tags







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