:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-minfi' .. highlight: bash bioconductor-minfi ================== .. conda:recipe:: bioconductor-minfi :replaces_section_title: :noindex: Analyze Illumina Infinium DNA methylation arrays :homepage: https://bioconductor.org/packages/3.14/bioc/html/minfi.html :license: Artistic-2.0 :recipe: /`bioconductor-minfi `_/`meta.yaml `_ :links: biotools: :biotools:`minfi` Tools to analyze \& visualize Illumina Infinium methylation arrays. .. conda:package:: bioconductor-minfi |downloads_bioconductor-minfi| |docker_bioconductor-minfi| :versions: .. raw:: html
1.40.0-01.38.0-01.36.0-11.36.0-01.34.0-01.32.0-01.30.0-11.28.0-01.26.2-0 ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.28.0-0``,  ``1.26.2-0``,  ``1.24.0-0``,  ``1.22.1-0``,  ``1.20.0-0``,  ``1.16.1-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-bumphunter: ``>=1.36.0,<1.37.0`` :depends bioconductor-delayedarray: ``>=0.20.0,<0.21.0`` :depends bioconductor-delayedmatrixstats: ``>=1.16.0,<1.17.0`` :depends bioconductor-genefilter: ``>=1.76.0,<1.77.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-geoquery: ``>=2.62.0,<2.63.0`` :depends bioconductor-hdf5array: ``>=1.22.0,<1.23.0`` :depends bioconductor-illuminaio: ``>=0.36.0,<0.37.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-preprocesscore: ``>=1.56.0,<1.57.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-siggenes: ``>=1.68.0,<1.69.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-beanplot: :depends r-data.table: :depends r-lattice: :depends r-mass: :depends r-mclust: :depends r-nlme: :depends r-nor1mix: :depends r-quadprog: :depends r-rcolorbrewer: :depends r-reshape: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-minfi and update with:: conda update bioconductor-minfi or use the docker container:: docker pull quay.io/biocontainers/bioconductor-minfi: (see `bioconductor-minfi/tags`_ for valid values for ````) .. |downloads_bioconductor-minfi| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-minfi.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-minfi :alt: (downloads) .. |docker_bioconductor-minfi| image:: https://quay.io/repository/biocontainers/bioconductor-minfi/status :target: https://quay.io/repository/biocontainers/bioconductor-minfi .. _`bioconductor-minfi/tags`: https://quay.io/repository/biocontainers/bioconductor-minfi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-minfi/README.html