:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-mirsm'
.. highlight: bash

bioconductor-mirsm
==================

.. conda:recipe:: bioconductor-mirsm
   :replaces_section_title:
   :noindex:

   Inferring miRNA sponge modules in heterogeneous data

   :homepage: https://bioconductor.org/packages/3.17/bioc/html/miRSM.html
   :license: GPL-3
   :recipe: /`bioconductor-mirsm <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mirsm>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mirsm/meta.yaml>`_

   The package aims to identify miRNA sponge modules in heterogeneous data. It provides several functions to study miRNA sponge modules\, including popular methods for inferring gene modules \(candidate miRNA sponge modules\)\, and a function to identify miRNA sponge modules\, as well as several functions to conduct modular analysis of miRNA sponge modules.


.. conda:package:: bioconductor-mirsm

   |downloads_bioconductor-mirsm| |docker_bioconductor-mirsm|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.18.0-0</code>,  <code>1.16.0-1</code>,  <code>1.16.0-0</code>,  <code>1.12.0-2</code>,  <code>1.12.0-1</code>,  <code>1.12.0-0</code>,  <code>1.10.0-0</code>,  <code>1.8.3-0</code>,  <code>1.8.0-0</code>,  </span></summary>
      

      ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.12.0-2``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.3-0``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.2.0-1``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-bicare: ``>=1.58.0,<1.59.0``
   :depends bioconductor-biobase: ``>=2.60.0,<2.61.0``
   :depends bioconductor-fabia: ``>=2.46.0,<2.47.0``
   :depends bioconductor-gseabase: ``>=1.62.0,<1.63.0``
   :depends bioconductor-ibbig: ``>=1.44.0,<1.45.0``
   :depends bioconductor-mirsponger: ``>=2.4.0,<2.5.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.17.0,<3.18.0``
   :depends bioconductor-rqubic: ``>=1.46.0,<1.47.0``
   :depends bioconductor-summarizedexperiment: ``>=1.30.0,<1.31.0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libcxx: ``>=15.0.7``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-bibitr: 
   :depends r-biclust: 
   :depends r-dbscan: 
   :depends r-dynamictreecut: 
   :depends r-energy: 
   :depends r-flashclust: 
   :depends r-gfa: 
   :depends r-igraph: 
   :depends r-isa2: 
   :depends r-linkcomm: 
   :depends r-matrixcorrelation: 
   :depends r-mcl: 
   :depends r-mclust: 
   :depends r-nmf: 
   :depends r-pma: 
   :depends r-ppclust: 
   :depends r-rcpp: 
   :depends r-s4vd: 
   :depends r-sombrero: 
   :depends r-subspace: 
   :depends r-wgcna: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-mirsm

   and update with::

      mamba update bioconductor-mirsm

  To create a new environment, run::

      mamba create --name myenvname bioconductor-mirsm

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-mirsm:<tag>

   (see `bioconductor-mirsm/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-mirsm| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mirsm.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-mirsm
   :alt:   (downloads)
.. |docker_bioconductor-mirsm| image:: https://quay.io/repository/biocontainers/bioconductor-mirsm/status
   :target: https://quay.io/repository/biocontainers/bioconductor-mirsm
.. _`bioconductor-mirsm/tags`: https://quay.io/repository/biocontainers/bioconductor-mirsm?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-mirsm";
        var versions = ["1.18.0","1.16.0","1.16.0","1.12.0","1.12.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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