:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-moanin' .. highlight: bash bioconductor-moanin =================== .. conda:recipe:: bioconductor-moanin :replaces_section_title: :noindex: An R Package for Time Course RNASeq Data Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/moanin.html :license: BSD 3-clause License + file LICENSE :recipe: /`bioconductor-moanin `_/`meta.yaml `_ Simple and efficient workflow for time\-course gene expression data\, built on publictly available open\-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time\-course data using functional data analysis\: \(1\) functional modeling of the timecourse data\; \(2\) differential expression analysis\; \(3\) clustering\; \(4\) downstream analysis. .. conda:package:: bioconductor-moanin |downloads_bioconductor-moanin| |docker_bioconductor-moanin| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-edger: ``>=4.0.0,<4.1.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends bioconductor-topgo: ``>=2.54.0,<2.55.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-clusterr: :depends r-mass: ``>=1.0.0`` :depends r-matrixstats: :depends r-nmi: :depends r-reshape2: :depends r-viridis: :depends r-zoo: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-moanin and update with:: mamba update bioconductor-moanin To create a new environment, run:: mamba create --name myenvname bioconductor-moanin with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-moanin: (see `bioconductor-moanin/tags`_ for valid values for ````) .. |downloads_bioconductor-moanin| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-moanin.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-moanin :alt: (downloads) .. |docker_bioconductor-moanin| image:: https://quay.io/repository/biocontainers/bioconductor-moanin/status :target: https://quay.io/repository/biocontainers/bioconductor-moanin .. _`bioconductor-moanin/tags`: https://quay.io/repository/biocontainers/bioconductor-moanin?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-moanin/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-moanin/README.html