:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mpranalyze' .. highlight: bash bioconductor-mpranalyze ======================= .. conda:recipe:: bioconductor-mpranalyze :replaces_section_title: :noindex: Statistical Analysis of MPRA data :homepage: https://bioconductor.org/packages/3.18/bioc/html/MPRAnalyze.html :license: GPL-3 :recipe: /`bioconductor-mpranalyze `_/`meta.yaml `_ MPRAnalyze provides statistical framework for the analysis of data generated by Massively Parallel Reporter Assays \(MPRAs\)\, used to directly measure enhancer activity. MPRAnalyze can be used for quantification of enhancer activity\, classification of active enhancers and comparative analyses of enhancer activity between conditions. MPRAnalyze construct a nested pair of generalized linear models \(GLMs\) to relate the DNA and RNA observations\, easily adjustable to various experimental designs and conditions\, and provides a set of rigorous statistical testig schemes. .. conda:package:: bioconductor-mpranalyze |downloads_bioconductor-mpranalyze| |docker_bioconductor-mpranalyze| :versions: .. raw:: html
1.20.0-01.18.0-01.16.0-01.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-0 ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-progress: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mpranalyze and update with:: mamba update bioconductor-mpranalyze To create a new environment, run:: mamba create --name myenvname bioconductor-mpranalyze with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mpranalyze: (see `bioconductor-mpranalyze/tags`_ for valid values for ````) .. |downloads_bioconductor-mpranalyze| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mpranalyze.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mpranalyze :alt: (downloads) .. |docker_bioconductor-mpranalyze| image:: https://quay.io/repository/biocontainers/bioconductor-mpranalyze/status :target: https://quay.io/repository/biocontainers/bioconductor-mpranalyze .. _`bioconductor-mpranalyze/tags`: https://quay.io/repository/biocontainers/bioconductor-mpranalyze?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mpranalyze/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mpranalyze/README.html