:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-nanostringnctools' .. highlight: bash bioconductor-nanostringnctools ============================== .. conda:recipe:: bioconductor-nanostringnctools :replaces_section_title: :noindex: NanoString nCounter Tools :homepage: https://bioconductor.org/packages/3.20/bioc/html/NanoStringNCTools.html :license: MIT :recipe: /`bioconductor-nanostringnctools `_/`meta.yaml `_ Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data. .. conda:package:: bioconductor-nanostringnctools |downloads_bioconductor-nanostringnctools| |docker_bioconductor-nanostringnctools| :versions: ``1.14.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biobase: ``>=2.66.0,<2.67.0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0`` :depends bioconductor-biostrings: ``>=2.74.0,<2.75.0`` :depends bioconductor-iranges: ``>=2.40.0,<2.41.0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0`` :depends r-base: ``>=4.4,<4.5.0a0`` :depends r-ggbeeswarm: :depends r-ggiraph: :depends r-ggplot2: :depends r-ggthemes: :depends r-pheatmap: :depends r-rcolorbrewer: :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-nanostringnctools and update with:: mamba update bioconductor-nanostringnctools To create a new environment, run:: mamba create --name myenvname bioconductor-nanostringnctools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-nanostringnctools: (see `bioconductor-nanostringnctools/tags`_ for valid values for ````) .. |downloads_bioconductor-nanostringnctools| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nanostringnctools.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-nanostringnctools :alt: (downloads) .. |docker_bioconductor-nanostringnctools| image:: https://quay.io/repository/biocontainers/bioconductor-nanostringnctools/status :target: https://quay.io/repository/biocontainers/bioconductor-nanostringnctools .. _`bioconductor-nanostringnctools/tags`: https://quay.io/repository/biocontainers/bioconductor-nanostringnctools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanostringnctools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-nanostringnctools/README.html