:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-nbamseq'
.. highlight: bash

bioconductor-nbamseq
====================

.. conda:recipe:: bioconductor-nbamseq
   :replaces_section_title:

   Negative Binomial Additive Model for RNA\-Seq Data

   :homepage: https://bioconductor.org/packages/3.10/bioc/html/NBAMSeq.html
   :license: GPL-2
   :recipe: /`bioconductor-nbamseq <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-nbamseq>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-nbamseq/meta.yaml>`_

   High\-throughput sequencing experiments followed by differential expression analysis is a widely used approach to detect genomic biomarkers. A fundamental step in differential expression analysis is to model the association between gene counts and covariates of interest. NBAMSeq a flexible statistical model based on the generalized additive model and allows for information sharing across genes in variance estimation.


.. conda:package:: bioconductor-nbamseq

   |downloads_bioconductor-nbamseq| |docker_bioconductor-nbamseq|

   :versions: 1.2.0-0, 1.0.0-1
   
   :depends bioconductor-biocparallel: >=1.20.0,<1.21.0
   :depends bioconductor-deseq2: >=1.26.0,<1.27.0
   :depends bioconductor-genefilter: >=1.68.0,<1.69.0
   :depends bioconductor-s4vectors: >=0.24.0,<0.25.0
   :depends bioconductor-summarizedexperiment: >=1.16.0,<1.17.0
   :depends r-base: >=3.6,<3.7.0a0
   :depends r-mgcv: >=1.8-24
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-nbamseq

   and update with::

      conda update bioconductor-nbamseq

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-nbamseq:<tag>

   (see `bioconductor-nbamseq/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-nbamseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nbamseq.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-nbamseq
   :alt:   (downloads)
.. |docker_bioconductor-nbamseq| image:: https://quay.io/repository/biocontainers/bioconductor-nbamseq/status
   :target: https://quay.io/repository/biocontainers/bioconductor-nbamseq
.. _`bioconductor-nbamseq/tags`: https://quay.io/repository/biocontainers/bioconductor-nbamseq?tab=tags







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