:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-nbamseq' .. highlight: bash bioconductor-nbamseq ==================== .. conda:recipe:: bioconductor-nbamseq :replaces_section_title: Negative Binomial Additive Model for RNA\-Seq Data :homepage: https://bioconductor.org/packages/3.10/bioc/html/NBAMSeq.html :license: GPL-2 :recipe: /`bioconductor-nbamseq `_/`meta.yaml `_ High\-throughput sequencing experiments followed by differential expression analysis is a widely used approach to detect genomic biomarkers. A fundamental step in differential expression analysis is to model the association between gene counts and covariates of interest. NBAMSeq a flexible statistical model based on the generalized additive model and allows for information sharing across genes in variance estimation. .. conda:package:: bioconductor-nbamseq |downloads_bioconductor-nbamseq| |docker_bioconductor-nbamseq| :versions: 1.2.0-0, 1.0.0-1 :depends bioconductor-biocparallel: >=1.20.0,<1.21.0 :depends bioconductor-deseq2: >=1.26.0,<1.27.0 :depends bioconductor-genefilter: >=1.68.0,<1.69.0 :depends bioconductor-s4vectors: >=0.24.0,<0.25.0 :depends bioconductor-summarizedexperiment: >=1.16.0,<1.17.0 :depends r-base: >=3.6,<3.7.0a0 :depends r-mgcv: >=1.8-24 :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-nbamseq and update with:: conda update bioconductor-nbamseq or use the docker container:: docker pull quay.io/biocontainers/bioconductor-nbamseq: (see `bioconductor-nbamseq/tags`_ for valid values for ````) .. |downloads_bioconductor-nbamseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nbamseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-nbamseq :alt: (downloads) .. |docker_bioconductor-nbamseq| image:: https://quay.io/repository/biocontainers/bioconductor-nbamseq/status :target: https://quay.io/repository/biocontainers/bioconductor-nbamseq .. _`bioconductor-nbamseq/tags`: https://quay.io/repository/biocontainers/bioconductor-nbamseq?tab=tags Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nbamseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-nbamseq/README.html