:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-oppar' .. highlight: bash bioconductor-oppar ================== .. conda:recipe:: bioconductor-oppar :replaces_section_title: :noindex: Outlier profile and pathway analysis in R :homepage: https://bioconductor.org/packages/3.14/bioc/html/oppar.html :license: GPL-2 :recipe: /`bioconductor-oppar `_/`meta.yaml `_ :links: biotools: :biotools:`oppar` The R implementation of mCOPA package published by Wang et al. \(2012\). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies\, methods presented in oppar can be used for outlier profile analysis in general. In addition\, tools are provided for gene set enrichment and pathway analysis. .. conda:package:: bioconductor-oppar |downloads_bioconductor-oppar| |docker_bioconductor-oppar| :versions: .. raw:: html
1.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-01.12.0-11.10.0-0 ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-gseabase: ``>=1.56.0,<1.57.0`` :depends bioconductor-gsva: ``>=1.42.0,<1.43.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-oppar and update with:: conda update bioconductor-oppar or use the docker container:: docker pull quay.io/biocontainers/bioconductor-oppar: (see `bioconductor-oppar/tags`_ for valid values for ````) .. |downloads_bioconductor-oppar| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-oppar.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-oppar :alt: (downloads) .. |docker_bioconductor-oppar| image:: https://quay.io/repository/biocontainers/bioconductor-oppar/status :target: https://quay.io/repository/biocontainers/bioconductor-oppar .. _`bioconductor-oppar/tags`: https://quay.io/repository/biocontainers/bioconductor-oppar?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-oppar/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-oppar/README.html