:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-peca' .. highlight: bash bioconductor-peca ================= .. conda:recipe:: bioconductor-peca :replaces_section_title: :noindex: Probe\-level Expression Change Averaging :homepage: https://bioconductor.org/packages/3.18/bioc/html/PECA.html :license: GPL (>= 2) :recipe: /`bioconductor-peca `_/`meta.yaml `_ :links: biotools: :biotools:`peca`, doi: :doi:`10.1007/978-1-4939-6518-2_11` Calculates Probe\-level Expression Change Averages \(PECA\) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide\-level mesurements respectively. .. conda:package:: bioconductor-peca |downloads_bioconductor-peca| |docker_bioconductor-peca| :versions: .. raw:: html
1.38.0-01.36.0-01.34.0-01.30.0-01.28.0-01.26.0-11.26.0-01.24.0-01.22.0-0 ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0`` .. raw:: html
:depends bioconductor-affy: ``>=1.80.0,<1.81.0`` :depends bioconductor-genefilter: ``>=1.84.0,<1.85.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0`` :depends bioconductor-rots: ``>=1.30.0,<1.31.0`` :depends r-aroma.affymetrix: :depends r-aroma.core: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-peca and update with:: mamba update bioconductor-peca To create a new environment, run:: mamba create --name myenvname bioconductor-peca with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-peca: (see `bioconductor-peca/tags`_ for valid values for ````) .. |downloads_bioconductor-peca| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-peca.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-peca :alt: (downloads) .. |docker_bioconductor-peca| image:: https://quay.io/repository/biocontainers/bioconductor-peca/status :target: https://quay.io/repository/biocontainers/bioconductor-peca .. _`bioconductor-peca/tags`: https://quay.io/repository/biocontainers/bioconductor-peca?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-peca/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-peca/README.html