:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-plyxp' .. highlight: bash bioconductor-plyxp ================== .. conda:recipe:: bioconductor-plyxp :replaces_section_title: :noindex: Data masks for SummarizedExperiment enabling dplyr\-like manipulation :homepage: https://bioconductor.org/packages/3.20/bioc/html/plyxp.html :license: MIT + file LICENSE :recipe: /`bioconductor-plyxp `_/`meta.yaml `_ The package provides \`rlang\` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for \`plyxp\` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame. .. conda:package:: bioconductor-plyxp |downloads_bioconductor-plyxp| |docker_bioconductor-plyxp| :versions: ``1.0.0-0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0`` :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0`` :depends r-base: ``>=4.4,<4.5.0a0`` :depends r-cli: :depends r-dplyr: :depends r-glue: :depends r-pillar: :depends r-purrr: :depends r-rlang: :depends r-s7: :depends r-tibble: :depends r-tidyr: :depends r-tidyselect: :depends r-vctrs: :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-plyxp and update with:: mamba update bioconductor-plyxp To create a new environment, run:: mamba create --name myenvname bioconductor-plyxp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-plyxp: (see `bioconductor-plyxp/tags`_ for valid values for ````) .. |downloads_bioconductor-plyxp| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-plyxp.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-plyxp :alt: (downloads) .. |docker_bioconductor-plyxp| image:: https://quay.io/repository/biocontainers/bioconductor-plyxp/status :target: https://quay.io/repository/biocontainers/bioconductor-plyxp .. _`bioconductor-plyxp/tags`: https://quay.io/repository/biocontainers/bioconductor-plyxp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-plyxp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-plyxp/README.html