:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-proloc' .. highlight: bash bioconductor-proloc =================== .. conda:recipe:: bioconductor-proloc :replaces_section_title: :noindex: A unifying bioinformatics framework for spatial proteomics :homepage: https://bioconductor.org/packages/3.18/bioc/html/pRoloc.html :license: GPL-2 :recipe: /`bioconductor-proloc `_/`meta.yaml `_ :links: biotools: :biotools:`proloc` The pRoloc package implements machine learning and visualisation methods for the analysis and interogation of quantitiative mass spectrometry data to reliably infer protein sub\-cellular localisation. .. conda:package:: bioconductor-proloc |downloads_bioconductor-proloc| |docker_bioconductor-proloc| :versions: .. raw:: html
1.42.0-01.40.1-01.38.0-11.38.0-01.34.0-21.34.0-11.34.0-01.32.0-01.30.0-1 ``1.42.0-0``,  ``1.40.1-0``,  ``1.38.0-1``,  ``1.38.0-0``,  ``1.34.0-2``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.1-0``,  ``1.22.0-0``,  ``1.18.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0a0`` :depends bioconductor-biomart: ``>=2.58.0,<2.59.0`` :depends bioconductor-biomart: ``>=2.58.0,<2.59.0a0`` :depends bioconductor-mlinterfaces: ``>=1.82.0,<1.83.0`` :depends bioconductor-mlinterfaces: ``>=1.82.0,<1.83.0a0`` :depends bioconductor-msnbase: ``>=2.28.0,<2.29.0`` :depends bioconductor-msnbase: ``>=2.28.1,<2.29.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-caret: :depends r-class: :depends r-coda: :depends r-dendextend: :depends r-e1071: :depends r-fnn: :depends r-ggplot2: :depends r-gtools: :depends r-hexbin: :depends r-kernlab: :depends r-knitr: :depends r-laplacesdemon: :depends r-lattice: :depends r-mass: :depends r-mclust: ``>=4.3`` :depends r-mixtools: :depends r-mvtnorm: :depends r-nnet: :depends r-plyr: :depends r-proxy: :depends r-randomforest: :depends r-rcolorbrewer: :depends r-rcpp: ``>=0.10.3`` :depends r-rcpparmadillo: :depends r-sampling: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-proloc and update with:: mamba update bioconductor-proloc To create a new environment, run:: mamba create --name myenvname bioconductor-proloc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-proloc: (see `bioconductor-proloc/tags`_ for valid values for ````) .. |downloads_bioconductor-proloc| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-proloc.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-proloc :alt: (downloads) .. |docker_bioconductor-proloc| image:: https://quay.io/repository/biocontainers/bioconductor-proloc/status :target: https://quay.io/repository/biocontainers/bioconductor-proloc .. _`bioconductor-proloc/tags`: https://quay.io/repository/biocontainers/bioconductor-proloc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-proloc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-proloc/README.html