:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-qckitfastq' .. highlight: bash bioconductor-qckitfastq ======================= .. conda:recipe:: bioconductor-qckitfastq :replaces_section_title: :noindex: FASTQ Quality Control :homepage: https://bioconductor.org/packages/3.18/bioc/html/qckitfastq.html :license: Artistic-2.0 :recipe: /`bioconductor-qckitfastq `_/`meta.yaml `_ Assessment of FASTQ file format with multiple metrics including quality score\, sequence content\, overrepresented sequence and Kmers. .. conda:package:: bioconductor-qckitfastq |downloads_bioconductor-qckitfastq| |docker_bioconductor-qckitfastq| :versions: .. raw:: html
1.18.0-01.16.0-01.14.0-11.14.0-01.10.0-21.10.0-11.10.0-01.8.0-01.6.0-2 ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.10.0-2``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-2``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-rseqan: ``>=1.22.0,<1.23.0`` :depends bioconductor-rseqan: ``>=1.22.0,<1.23.0a0`` :depends bioconductor-seqtools: ``>=1.36.0,<1.37.0`` :depends bioconductor-seqtools: ``>=1.36.0,<1.37.0a0`` :depends bioconductor-zlibbioc: ``>=1.48.0,<1.49.0`` :depends bioconductor-zlibbioc: ``>=1.48.0,<1.49.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-dplyr: :depends r-ggplot2: :depends r-magrittr: :depends r-rcpp: :depends r-reshape2: :depends r-rlang: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-qckitfastq and update with:: mamba update bioconductor-qckitfastq To create a new environment, run:: mamba create --name myenvname bioconductor-qckitfastq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-qckitfastq: (see `bioconductor-qckitfastq/tags`_ for valid values for ````) .. |downloads_bioconductor-qckitfastq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-qckitfastq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-qckitfastq :alt: (downloads) .. |docker_bioconductor-qckitfastq| image:: https://quay.io/repository/biocontainers/bioconductor-qckitfastq/status :target: https://quay.io/repository/biocontainers/bioconductor-qckitfastq .. _`bioconductor-qckitfastq/tags`: https://quay.io/repository/biocontainers/bioconductor-qckitfastq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-qckitfastq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-qckitfastq/README.html