:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-qcmetrics' .. highlight: bash bioconductor-qcmetrics ====================== .. conda:recipe:: bioconductor-qcmetrics :replaces_section_title: :noindex: A Framework for Quality Control :homepage: https://bioconductor.org/packages/3.14/bioc/html/qcmetrics.html :license: GPL-2 :recipe: /`bioconductor-qcmetrics `_/`meta.yaml `_ :links: biotools: :biotools:`qcmetrics`, doi: :doi:`10.1038/nmeth.3252` The package provides a framework for generic quality control of data. It permits to create\, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats. .. conda:package:: bioconductor-qcmetrics |downloads_bioconductor-qcmetrics| |docker_bioconductor-qcmetrics| :versions: .. raw:: html
1.32.0-01.30.0-01.28.0-11.28.0-01.26.0-01.24.0-01.22.0-11.20.1-01.20.0-0 ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.1-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-knitr: :depends r-pander: :depends r-xtable: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-qcmetrics and update with:: conda update bioconductor-qcmetrics or use the docker container:: docker pull quay.io/biocontainers/bioconductor-qcmetrics: (see `bioconductor-qcmetrics/tags`_ for valid values for ````) .. |downloads_bioconductor-qcmetrics| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-qcmetrics.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-qcmetrics :alt: (downloads) .. |docker_bioconductor-qcmetrics| image:: https://quay.io/repository/biocontainers/bioconductor-qcmetrics/status :target: https://quay.io/repository/biocontainers/bioconductor-qcmetrics .. _`bioconductor-qcmetrics/tags`: https://quay.io/repository/biocontainers/bioconductor-qcmetrics?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-qcmetrics/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-qcmetrics/README.html