:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rdrtoolbox' .. highlight: bash bioconductor-rdrtoolbox ======================= .. conda:recipe:: bioconductor-rdrtoolbox :replaces_section_title: :noindex: A package for nonlinear dimension reduction with Isomap and LLE. :homepage: https://bioconductor.org/packages/3.18/bioc/html/RDRToolbox.html :license: GPL (>= 2) :recipe: /`bioconductor-rdrtoolbox `_/`meta.yaml `_ A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis\-Bouldin\-Index for cluster validation\, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset. .. conda:package:: bioconductor-rdrtoolbox |downloads_bioconductor-rdrtoolbox| |docker_bioconductor-rdrtoolbox| :versions: .. raw:: html
1.52.0-01.50.0-01.48.0-01.44.0-01.42.0-01.40.0-11.40.0-01.38.0-01.36.0-0 ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-0``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-mass: :depends r-rgl: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rdrtoolbox and update with:: mamba update bioconductor-rdrtoolbox To create a new environment, run:: mamba create --name myenvname bioconductor-rdrtoolbox with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rdrtoolbox: (see `bioconductor-rdrtoolbox/tags`_ for valid values for ````) .. |downloads_bioconductor-rdrtoolbox| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rdrtoolbox.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rdrtoolbox :alt: (downloads) .. |docker_bioconductor-rdrtoolbox| image:: https://quay.io/repository/biocontainers/bioconductor-rdrtoolbox/status :target: https://quay.io/repository/biocontainers/bioconductor-rdrtoolbox .. _`bioconductor-rdrtoolbox/tags`: https://quay.io/repository/biocontainers/bioconductor-rdrtoolbox?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rdrtoolbox/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rdrtoolbox/README.html