:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-reactomepa'
.. highlight: bash

bioconductor-reactomepa
=======================

.. conda:recipe:: bioconductor-reactomepa
   :replaces_section_title:

   This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis\, gene set enrichment analysis and several functions for visualization.

   :homepage: https://bioconductor.org/packages/3.9/bioc/html/ReactomePA.html
   :license: GPL-2
   :recipe: /`bioconductor-reactomepa <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-reactomepa>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-reactomepa/meta.yaml>`_
   :links: biotools: :biotools:`reactomepa`

   


.. conda:package:: bioconductor-reactomepa

   |downloads_bioconductor-reactomepa| |docker_bioconductor-reactomepa|

   :versions: 1.26.0-0, 1.24.0-0, 1.22.0-0
   
   :depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
   :depends bioconductor-dose: >=3.8.0,<3.9.0
   :depends bioconductor-enrichplot: >=1.2.0,<1.3.0
   :depends bioconductor-graphite: >=1.28.0,<1.29.0
   :depends bioconductor-reactome.db: >=1.66.0,<1.67.0
   :depends r-base: >=3.5.1,<3.5.2.0a0
   :depends r-ggplot2: 
   :depends r-ggraph: 
   :depends r-igraph: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-reactomepa

   and update with::

      conda update bioconductor-reactomepa

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-reactomepa:<tag>

   (see `bioconductor-reactomepa/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-reactomepa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-reactomepa.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-reactomepa
   :alt:   (downloads)
.. |docker_bioconductor-reactomepa| image:: https://quay.io/repository/biocontainers/bioconductor-reactomepa/status
   :target: https://quay.io/repository/biocontainers/bioconductor-reactomepa
.. _`bioconductor-reactomepa/tags`: https://quay.io/repository/biocontainers/bioconductor-reactomepa?tab=tags







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