:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-reactomepa' .. highlight: bash bioconductor-reactomepa ======================= .. conda:recipe:: bioconductor-reactomepa :replaces_section_title: :noindex: Reactome Pathway Analysis :homepage: https://bioconductor.org/packages/3.14/bioc/html/ReactomePA.html :license: GPL-2 :recipe: /`bioconductor-reactomepa `_/`meta.yaml `_ :links: biotools: :biotools:`reactomepa` This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis\, gene set enrichment analysis and several functions for visualization. .. conda:package:: bioconductor-reactomepa |downloads_bioconductor-reactomepa| |docker_bioconductor-reactomepa| :versions: .. raw:: html
1.38.0-01.36.0-01.34.0-11.34.0-01.32.0-01.30.0-01.28.0-11.26.0-01.24.0-0 ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-dose: ``>=3.20.0,<3.21.0`` :depends bioconductor-enrichplot: ``>=1.14.0,<1.15.0`` :depends bioconductor-graphite: ``>=1.40.0,<1.41.0`` :depends bioconductor-reactome.db: ``>=1.77.0,<1.78.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-ggplot2: :depends r-ggraph: :depends r-igraph: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-reactomepa and update with:: conda update bioconductor-reactomepa or use the docker container:: docker pull quay.io/biocontainers/bioconductor-reactomepa: (see `bioconductor-reactomepa/tags`_ for valid values for ````) .. |downloads_bioconductor-reactomepa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-reactomepa.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-reactomepa :alt: (downloads) .. |docker_bioconductor-reactomepa| image:: https://quay.io/repository/biocontainers/bioconductor-reactomepa/status :target: https://quay.io/repository/biocontainers/bioconductor-reactomepa .. _`bioconductor-reactomepa/tags`: https://quay.io/repository/biocontainers/bioconductor-reactomepa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reactomepa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-reactomepa/README.html