:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-regionreport' .. highlight: bash bioconductor-regionreport ========================= .. conda:recipe:: bioconductor-regionreport :replaces_section_title: :noindex: Generate HTML or PDF reports for a set of genomic regions or DESeq2\/edgeR results :homepage: https://bioconductor.org/packages/3.14/bioc/html/regionReport.html :license: Artistic-2.0 :recipe: /`bioconductor-regionreport `_/`meta.yaml `_ Generate HTML or PDF reports to explore a set of regions such as the results from annotation\-agnostic expression analysis of RNA\-seq data at base\-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results. .. conda:package:: bioconductor-regionreport |downloads_bioconductor-regionreport| |docker_bioconductor-regionreport| :versions: ``1.27.1-0``,  ``1.26.0-0``,  ``1.24.2-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.2-0``,  ``1.16.1-0`` :depends bioconductor-biocstyle: ``>=2.22.0,<2.23.0`` :depends bioconductor-deformats: ``>=1.22.0,<1.23.0`` :depends bioconductor-derfinder: ``>=1.28.0,<1.29.0`` :depends bioconductor-deseq2: ``>=1.34.0,<1.35.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-knitr: ``>=1.6`` :depends r-knitrbootstrap: ``>=0.9.0`` :depends r-refmanager: :depends r-rmarkdown: ``>=0.9.5`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-regionreport and update with:: conda update bioconductor-regionreport or use the docker container:: docker pull quay.io/biocontainers/bioconductor-regionreport: (see `bioconductor-regionreport/tags`_ for valid values for ````) .. |downloads_bioconductor-regionreport| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-regionreport.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-regionreport :alt: (downloads) .. |docker_bioconductor-regionreport| image:: https://quay.io/repository/biocontainers/bioconductor-regionreport/status :target: https://quay.io/repository/biocontainers/bioconductor-regionreport .. _`bioconductor-regionreport/tags`: https://quay.io/repository/biocontainers/bioconductor-regionreport?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-regionreport/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-regionreport/README.html