:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rhdf5' .. highlight: bash bioconductor-rhdf5 ================== .. conda:recipe:: bioconductor-rhdf5 :replaces_section_title: :noindex: R Interface to HDF5 :homepage: https://bioconductor.org/packages/3.18/bioc/html/rhdf5.html :license: Artistic-2.0 :recipe: /`bioconductor-rhdf5 `_/`meta.yaml `_ :links: biotools: :biotools:`rhdf5` This package provides an interface between HDF5 and R. HDF5\'s main features are the ability to store and access very large and\/or complex datasets and a wide variety of metadata on mass storage \(disk\) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and\/or complex datasets between R and other software package\, and for letting R applications work on datasets that are larger than the available RAM. .. conda:package:: bioconductor-rhdf5 |downloads_bioconductor-rhdf5| |docker_bioconductor-rhdf5| :versions: .. raw:: html
2.46.1-02.44.0-12.44.0-02.42.0-22.42.0-12.42.0-02.38.1-02.38.0-22.38.0-1 ``2.46.1-0``,  ``2.44.0-1``,  ``2.44.0-0``,  ``2.42.0-2``,  ``2.42.0-1``,  ``2.42.0-0``,  ``2.38.1-0``,  ``2.38.0-2``,  ``2.38.0-1``,  ``2.36.0-2``,  ``2.34.0-1``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-0``,  ``2.28.0-1``,  ``2.28.0-0``,  ``2.26.2-2``,  ``2.26.2-1``,  ``2.26.2-0``,  ``2.26.1-0``,  ``2.26.0-2``,  ``2.26.0-1``,  ``2.26.0-0``,  ``2.24.0-0``,  ``2.22.0-0``,  ``2.20.0-1``,  ``2.20.0-0``,  ``2.16.0-1``,  ``2.16.0-0``,  ``2.14.0-1``,  ``2.14.0-0``,  ``2.12.0-0`` .. raw:: html
:depends bioconductor-rhdf5filters: ``>=1.14.0,<1.15.0`` :depends bioconductor-rhdf5filters: ``>=1.14.1,<1.15.0a0`` :depends bioconductor-rhdf5lib: ``>=1.24.0,<1.25.0`` :depends bioconductor-rhdf5lib: ``>=1.24.0,<1.25.0a0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-s4vectors: ``>=0.40.2,<0.41.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rhdf5 and update with:: mamba update bioconductor-rhdf5 To create a new environment, run:: mamba create --name myenvname bioconductor-rhdf5 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rhdf5: (see `bioconductor-rhdf5/tags`_ for valid values for ````) .. |downloads_bioconductor-rhdf5| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rhdf5.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rhdf5 :alt: (downloads) .. |docker_bioconductor-rhdf5| image:: https://quay.io/repository/biocontainers/bioconductor-rhdf5/status :target: https://quay.io/repository/biocontainers/bioconductor-rhdf5 .. _`bioconductor-rhdf5/tags`: https://quay.io/repository/biocontainers/bioconductor-rhdf5?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rhdf5/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rhdf5/README.html