:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rhtslib'
.. highlight: bash

bioconductor-rhtslib
====================

.. conda:recipe:: bioconductor-rhtslib
   :replaces_section_title:

   HTSlib high\-throughput sequencing library as an R package

   :homepage: https://bioconductor.org/packages/3.10/bioc/html/Rhtslib.html
   :license: LGPL (>= 2)
   :recipe: /`bioconductor-rhtslib <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rhtslib>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rhtslib/meta.yaml>`_
   :links: biotools: :biotools:`rhtslib`, doi: :doi:`10.1038/nmeth.3252`

   This package provides version 1.7 of the \'HTSlib\' C library for high\-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette\, vignette\(package\=\"Rhtslib\"\, \"Rhtslib\"\).


.. conda:package:: bioconductor-rhtslib

   |downloads_bioconductor-rhtslib| |docker_bioconductor-rhtslib|

   :versions: 1.18.0-1, 1.16.1-1, 1.16.1-0, 1.14.1-0, 1.14.0-0, 1.12.1-0, 1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0
   
   :depends bioconductor-zlibbioc: >=1.32.0,<1.33.0
   :depends bzip2: >=1.0.8,<2.0a0
   :depends libcurl: >=7.64.1,<8.0a0
   :depends libgcc-ng: >=7.3.0
   :depends r-base: >=3.6,<3.7.0a0
   :depends xz: >=5.2.4,<5.3.0a0
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-rhtslib

   and update with::

      conda update bioconductor-rhtslib

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rhtslib:<tag>

   (see `bioconductor-rhtslib/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rhtslib| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rhtslib.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rhtslib
   :alt:   (downloads)
.. |docker_bioconductor-rhtslib| image:: https://quay.io/repository/biocontainers/bioconductor-rhtslib/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rhtslib
.. _`bioconductor-rhtslib/tags`: https://quay.io/repository/biocontainers/bioconductor-rhtslib?tab=tags







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