:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rhtslib' .. highlight: bash bioconductor-rhtslib ==================== .. conda:recipe:: bioconductor-rhtslib :replaces_section_title: HTSlib high\-throughput sequencing library as an R package :homepage: https://bioconductor.org/packages/3.10/bioc/html/Rhtslib.html :license: LGPL (>= 2) :recipe: /`bioconductor-rhtslib `_/`meta.yaml `_ :links: biotools: :biotools:`rhtslib`, doi: :doi:`10.1038/nmeth.3252` This package provides version 1.7 of the \'HTSlib\' C library for high\-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette\, vignette\(package\=\"Rhtslib\"\, \"Rhtslib\"\). .. conda:package:: bioconductor-rhtslib |downloads_bioconductor-rhtslib| |docker_bioconductor-rhtslib| :versions: 1.18.0-1, 1.16.1-1, 1.16.1-0, 1.14.1-0, 1.14.0-0, 1.12.1-0, 1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0 :depends bioconductor-zlibbioc: >=1.32.0,<1.33.0 :depends bzip2: >=1.0.8,<2.0a0 :depends libcurl: >=7.64.1,<8.0a0 :depends libgcc-ng: >=7.3.0 :depends r-base: >=3.6,<3.7.0a0 :depends xz: >=5.2.4,<5.3.0a0 :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-rhtslib and update with:: conda update bioconductor-rhtslib or use the docker container:: docker pull quay.io/biocontainers/bioconductor-rhtslib: (see `bioconductor-rhtslib/tags`_ for valid values for ````) .. |downloads_bioconductor-rhtslib| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rhtslib.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rhtslib :alt: (downloads) .. |docker_bioconductor-rhtslib| image:: https://quay.io/repository/biocontainers/bioconductor-rhtslib/status :target: https://quay.io/repository/biocontainers/bioconductor-rhtslib .. _`bioconductor-rhtslib/tags`: https://quay.io/repository/biocontainers/bioconductor-rhtslib?tab=tags Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rhtslib/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rhtslib/README.html