:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-risa' .. highlight: bash bioconductor-risa ================= .. conda:recipe:: bioconductor-risa :replaces_section_title: :noindex: Converting experimental metadata from ISA\-tab into Bioconductor data structures :homepage: https://bioconductor.org/packages/3.18/bioc/html/Risa.html :license: LGPL :recipe: /`bioconductor-risa `_/`meta.yaml `_ :links: biotools: :biotools:`risa` The Investigation \/ Study \/ Assay \(ISA\) tab\-delimited format is a general purpose framework with which to collect and communicate complex metadata \(i.e. sample characteristics\, technologies used\, type of measurements made\) from experiments employing a combination of technologies\, spanning from traditional approaches to high\-throughput techniques. Risa allows to access metadata\/data in ISA\-Tab format and build Bioconductor data structures. Currently\, data generated from microarray\, flow cytometry and metabolomics\-based \(i.e. mass spectrometry\) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays. .. conda:package:: bioconductor-risa |downloads_bioconductor-risa| |docker_bioconductor-risa| :versions: .. raw:: html
1.44.0-01.42.0-01.40.0-11.40.0-01.36.0-21.36.0-11.36.0-01.34.0-01.32.0-1 ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-1``,  ``1.40.0-0``,  ``1.36.0-2``,  ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-1``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0`` .. raw:: html
:depends bioconductor-affy: ``>=1.80.0,<1.81.0`` :depends bioconductor-affy: ``>=1.80.0,<1.81.0a0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-biocviews: ``>=1.70.0,<1.71.0`` :depends bioconductor-biocviews: ``>=1.70.0,<1.71.0a0`` :depends bioconductor-xcms: ``>=4.0.0,<4.1.0`` :depends bioconductor-xcms: ``>=4.0.0,<4.1.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-rcpp: ``>=0.9.13`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-risa and update with:: mamba update bioconductor-risa To create a new environment, run:: mamba create --name myenvname bioconductor-risa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-risa: (see `bioconductor-risa/tags`_ for valid values for ````) .. |downloads_bioconductor-risa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-risa.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-risa :alt: (downloads) .. |docker_bioconductor-risa| image:: https://quay.io/repository/biocontainers/bioconductor-risa/status :target: https://quay.io/repository/biocontainers/bioconductor-risa .. _`bioconductor-risa/tags`: https://quay.io/repository/biocontainers/bioconductor-risa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-risa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-risa/README.html