:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ritan' .. highlight: bash bioconductor-ritan ================== .. conda:recipe:: bioconductor-ritan :replaces_section_title: :noindex: Rapid Integration of Term Annotation and Network resources :homepage: https://bioconductor.org/packages/3.18/bioc/html/RITAN.html :license: file LICENSE :recipe: /`bioconductor-ritan `_/`meta.yaml `_ Tools for comprehensive gene set enrichment and extraction of multi\-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research. .. conda:package:: bioconductor-ritan |downloads_bioconductor-ritan| |docker_bioconductor-ritan| :versions: .. raw:: html
1.26.0-01.24.0-01.22.0-01.17.0-01.16.0-01.14.0-11.14.0-01.12.0-01.10.0-1 ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.17.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.0-1``,  ``1.6.0-1``,  ``1.6.0-0`` .. raw:: html
:depends bioconductor-annotationfilter: ``>=1.26.0,<1.27.0`` :depends bioconductor-bgeedb: ``>=2.28.0,<2.29.0`` :depends bioconductor-ensdb.hsapiens.v86: ``>=2.99.0,<2.100.0`` :depends bioconductor-ensembldb: ``>=2.26.0,<2.27.0`` :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0`` :depends bioconductor-ritandata: ``>=1.26.0,<1.27.0`` :depends bioconductor-stringdb: ``>=2.14.0,<2.15.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dynamictreecut: :depends r-ggplot2: :depends r-gplots: :depends r-gridextra: :depends r-gsubfn: :depends r-hash: :depends r-igraph: :depends r-knitr: :depends r-linkcomm: :depends r-mcl: :depends r-plotrix: :depends r-png: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-sqldf: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ritan and update with:: mamba update bioconductor-ritan To create a new environment, run:: mamba create --name myenvname bioconductor-ritan with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ritan: (see `bioconductor-ritan/tags`_ for valid values for ````) .. |downloads_bioconductor-ritan| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ritan.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ritan :alt: (downloads) .. |docker_bioconductor-ritan| image:: https://quay.io/repository/biocontainers/bioconductor-ritan/status :target: https://quay.io/repository/biocontainers/bioconductor-ritan .. _`bioconductor-ritan/tags`: https://quay.io/repository/biocontainers/bioconductor-ritan?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ritan/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ritan/README.html