:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rlhub' .. highlight: bash bioconductor-rlhub ================== .. conda:recipe:: bioconductor-rlhub :replaces_section_title: :noindex: An ExperimentHub package for accessing processed RLSuite data sets :homepage: https://bioconductor.org/packages/3.14/data/experiment/html/RLHub.html :license: MIT + file LICENSE :recipe: /`bioconductor-rlhub `_/`meta.yaml `_ \| RLHub provides a convenient interface to the processed data provided within RLSuite\, a tool\-chain for analyzing R\-loop\-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally\, RLHub provides a stand\-alone R interface to these data\, benefiting users who are addressing questions related to R\-loop regions \(RL\-Regions\)\, R\-loop\-binding proteins \(RLBPs\)\, R\-loop co\-localizing factors\, and the differences between R\-loop\-mapping methods. The full data\-generating protocol is found here\: https\:\/\/github.com\/Bishop\-Laboratory\/RLBase\-data. .. conda:package:: bioconductor-rlhub |downloads_bioconductor-rlhub| |docker_bioconductor-rlhub| :versions: ``1.0.0-0`` :depends bioconductor-annotationhub: ``>=3.2.0,<3.3.0`` :depends bioconductor-experimenthub: ``>=2.2.0,<2.3.0`` :depends curl: ``>=7.79.1,<8.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-rlhub and update with:: conda update bioconductor-rlhub or use the docker container:: docker pull quay.io/biocontainers/bioconductor-rlhub: (see `bioconductor-rlhub/tags`_ for valid values for ````) .. |downloads_bioconductor-rlhub| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rlhub.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rlhub :alt: (downloads) .. |docker_bioconductor-rlhub| image:: https://quay.io/repository/biocontainers/bioconductor-rlhub/status :target: https://quay.io/repository/biocontainers/bioconductor-rlhub .. _`bioconductor-rlhub/tags`: https://quay.io/repository/biocontainers/bioconductor-rlhub?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rlhub/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rlhub/README.html