:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rnaagecalc'
.. highlight: bash

bioconductor-rnaagecalc
=======================

.. conda:recipe:: bioconductor-rnaagecalc
   :replaces_section_title:
   :noindex:

   A multi\-tissue transcriptional age calculator

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/RNAAgeCalc.html
   :license: GPL-2
   :recipe: /`bioconductor-rnaagecalc <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rnaagecalc>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rnaagecalc/meta.yaml>`_

   It has been shown that both DNA methylation and RNA transcription are linked to chronological age and age related diseases. Several estimators have been developed to predict human aging from DNA level and RNA level. Most of the human transcriptional age predictor are based on microarray data and limited to only a few tissues. To date\, transcriptional studies on aging using RNASeq data from different human tissues is limited. The aim of this package is to provide a tool for across\-tissue and tissue\-specific transcriptional age calculation based on GTEx RNASeq data.


.. conda:package:: bioconductor-rnaagecalc

   |downloads_bioconductor-rnaagecalc| |docker_bioconductor-rnaagecalc|

   :versions:
      
      

      ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0``
   :depends bioconductor-impute: ``>=1.76.0,<1.77.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.18.0,<3.19.0``
   :depends bioconductor-recount: ``>=1.28.0,<1.29.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-rnaagecalc

   and update with::

      mamba update bioconductor-rnaagecalc

  To create a new environment, run::

      mamba create --name myenvname bioconductor-rnaagecalc

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rnaagecalc:<tag>

   (see `bioconductor-rnaagecalc/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rnaagecalc| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rnaagecalc.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rnaagecalc
   :alt:   (downloads)
.. |docker_bioconductor-rnaagecalc| image:: https://quay.io/repository/biocontainers/bioconductor-rnaagecalc/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rnaagecalc
.. _`bioconductor-rnaagecalc/tags`: https://quay.io/repository/biocontainers/bioconductor-rnaagecalc?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-rnaagecalc";
        var versions = ["1.14.0","1.12.0","1.10.0","1.6.0","1.4.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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