:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rnainteractmapk' .. highlight: bash bioconductor-rnainteractmapk ============================ .. conda:recipe:: bioconductor-rnainteractmapk :replaces_section_title: :noindex: Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/RNAinteractMAPK.html :license: Artistic-2.0 :recipe: /`bioconductor-rnainteractmapk `_/`meta.yaml `_ This package includes all data used in the paper \-Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi\- by Horn\, Sandmann\, Fischer et al..\, Nat. Methods\, 2011. The package vignette shows the R code to reproduce all figures in the paper. .. conda:package:: bioconductor-rnainteractmapk |downloads_bioconductor-rnainteractmapk| |docker_bioconductor-rnainteractmapk| :versions: .. raw:: html
1.40.0-01.38.0-01.36.0-01.32.0-11.32.0-01.30.0-01.25.0-01.24.0-01.22.0-1 ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-1``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.25.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-genefilter: ``>=1.84.0,<1.85.0`` :depends bioconductor-rnainteract: ``>=1.50.0,<1.51.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-fields: :depends r-gdata: :depends r-lattice: :depends r-mass: :depends r-sparselda: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rnainteractmapk and update with:: mamba update bioconductor-rnainteractmapk To create a new environment, run:: mamba create --name myenvname bioconductor-rnainteractmapk with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rnainteractmapk: (see `bioconductor-rnainteractmapk/tags`_ for valid values for ````) .. |downloads_bioconductor-rnainteractmapk| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rnainteractmapk.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rnainteractmapk :alt: (downloads) .. |docker_bioconductor-rnainteractmapk| image:: https://quay.io/repository/biocontainers/bioconductor-rnainteractmapk/status :target: https://quay.io/repository/biocontainers/bioconductor-rnainteractmapk .. _`bioconductor-rnainteractmapk/tags`: https://quay.io/repository/biocontainers/bioconductor-rnainteractmapk?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rnainteractmapk/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rnainteractmapk/README.html