:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rwikipathways' .. highlight: bash bioconductor-rwikipathways ========================== .. conda:recipe:: bioconductor-rwikipathways :replaces_section_title: :noindex: rWikiPathways \- R client library for the WikiPathways API :homepage: https://bioconductor.org/packages/3.18/bioc/html/rWikiPathways.html :license: MIT + file LICENSE :recipe: /`bioconductor-rwikipathways `_/`meta.yaml `_ Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats\, including official monthly release files and convenient GMT read\/write functions. .. conda:package:: bioconductor-rwikipathways |downloads_bioconductor-rwikipathways| |docker_bioconductor-rwikipathways| :versions: .. raw:: html
1.22.1-01.20.0-01.18.0-01.14.0-01.12.0-01.10.1-01.10.0-01.8.2-01.6.0-0 ``1.22.1-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.1-0``,  ``1.10.0-0``,  ``1.8.2-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-dplyr: :depends r-httr: :depends r-lubridate: :depends r-purrr: :depends r-rcurl: :depends r-readr: :depends r-rjson: :depends r-stringr: :depends r-tidyr: :depends r-xml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rwikipathways and update with:: mamba update bioconductor-rwikipathways To create a new environment, run:: mamba create --name myenvname bioconductor-rwikipathways with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rwikipathways: (see `bioconductor-rwikipathways/tags`_ for valid values for ````) .. |downloads_bioconductor-rwikipathways| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rwikipathways.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rwikipathways :alt: (downloads) .. |docker_bioconductor-rwikipathways| image:: https://quay.io/repository/biocontainers/bioconductor-rwikipathways/status :target: https://quay.io/repository/biocontainers/bioconductor-rwikipathways .. _`bioconductor-rwikipathways/tags`: https://quay.io/repository/biocontainers/bioconductor-rwikipathways?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rwikipathways/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rwikipathways/README.html