:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-safe' .. highlight: bash bioconductor-safe ================= .. conda:recipe:: bioconductor-safe :replaces_section_title: :noindex: Significance Analysis of Function and Expression :homepage: https://bioconductor.org/packages/3.14/bioc/html/safe.html :license: GPL (>= 2) :recipe: /`bioconductor-safe `_/`meta.yaml `_ :links: biotools: :biotools:`safe`, doi: :doi:`10.1093/bioinformatics/bti260` SAFE is a resampling\-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2\-sample and multi\-class comparisons\, or simple linear regressions. Other experimental designs can also be accommodated through user\-defined functions. .. conda:package:: bioconductor-safe |downloads_bioconductor-safe| |docker_bioconductor-safe| :versions: .. raw:: html
3.34.0-03.32.0-03.30.0-13.30.0-03.27.0-03.26.0-03.24.0-13.22.0-03.20.0-0 ``3.34.0-0``,  ``3.32.0-0``,  ``3.30.0-1``,  ``3.30.0-0``,  ``3.27.0-0``,  ``3.26.0-0``,  ``3.24.0-1``,  ``3.22.0-0``,  ``3.20.0-0``,  ``3.18.0-0``,  ``3.16.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-sparsem: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-safe and update with:: conda update bioconductor-safe or use the docker container:: docker pull quay.io/biocontainers/bioconductor-safe: (see `bioconductor-safe/tags`_ for valid values for ````) .. |downloads_bioconductor-safe| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-safe.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-safe :alt: (downloads) .. |docker_bioconductor-safe| image:: https://quay.io/repository/biocontainers/bioconductor-safe/status :target: https://quay.io/repository/biocontainers/bioconductor-safe .. _`bioconductor-safe/tags`: https://quay.io/repository/biocontainers/bioconductor-safe?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-safe/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-safe/README.html