:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-scdd'
.. highlight: bash

bioconductor-scdd
=================

.. conda:recipe:: bioconductor-scdd
   :replaces_section_title:
   :noindex:

   Mixture modeling of single\-cell RNA\-seq data to identify genes with differential distributions

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/scDD.html
   :license: GPL-2
   :recipe: /`bioconductor-scdd <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-scdd>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-scdd/meta.yaml>`_

   This package implements a method to analyze single\-cell RNA\- seq Data utilizing flexible Dirichlet Process mixture models. Genes with differential distributions of expression are classified into several interesting patterns of differences between two conditions. The package also includes functions for simulating data with these patterns from negative binomial distributions.


.. conda:package:: bioconductor-scdd

   |downloads_bioconductor-scdd| |docker_bioconductor-scdd|

   :versions:
      
      

      ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.6.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0``
   :depends bioconductor-ebseq: ``>=1.34.0,<1.35.0``
   :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0``
   :depends bioconductor-scran: ``>=1.22.0,<1.23.0``
   :depends bioconductor-singlecellexperiment: ``>=1.16.0,<1.17.0``
   :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0``
   :depends r-arm: 
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-fields: 
   :depends r-ggplot2: 
   :depends r-mclust: 
   :depends r-outliers: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-scdd

   and update with::

      conda update bioconductor-scdd

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-scdd:<tag>

   (see `bioconductor-scdd/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-scdd| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scdd.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-scdd
   :alt:   (downloads)
.. |docker_bioconductor-scdd| image:: https://quay.io/repository/biocontainers/bioconductor-scdd/status
   :target: https://quay.io/repository/biocontainers/bioconductor-scdd
.. _`bioconductor-scdd/tags`: https://quay.io/repository/biocontainers/bioconductor-scdd?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-scdd";
        var versions = ["1.18.0","1.16.0","1.14.0","1.14.0","1.12.0"];
    </script>






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