:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-scry' .. highlight: bash bioconductor-scry ================= .. conda:recipe:: bioconductor-scry :replaces_section_title: :noindex: Small\-Count Analysis Methods for High\-Dimensional Data :homepage: https://bioconductor.org/packages/3.18/bioc/html/scry.html :license: Artistic-2.0 :recipe: /`bioconductor-scry `_/`meta.yaml `_ Many modern biological datasets consist of small counts that are not well fit by standard linear\-Gaussian methods such as principal component analysis. This package provides implementations of count\-based feature selection and dimension reduction algorithms. These methods can be used to facilitate unsupervised analysis of any high\-dimensional data such as single\-cell RNA\-seq. .. conda:package:: bioconductor-scry |downloads_bioconductor-scry| |docker_bioconductor-scry| :versions: ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocsingular: ``>=1.18.0,<1.19.0`` :depends bioconductor-delayedarray: ``>=0.28.0,<0.29.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-glmpca: ``>=0.2.0`` :depends r-matrix: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-scry and update with:: mamba update bioconductor-scry To create a new environment, run:: mamba create --name myenvname bioconductor-scry with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-scry: (see `bioconductor-scry/tags`_ for valid values for ````) .. |downloads_bioconductor-scry| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scry.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-scry :alt: (downloads) .. |docker_bioconductor-scry| image:: https://quay.io/repository/biocontainers/bioconductor-scry/status :target: https://quay.io/repository/biocontainers/bioconductor-scry .. _`bioconductor-scry/tags`: https://quay.io/repository/biocontainers/bioconductor-scry?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scry/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-scry/README.html