:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-sctensor' .. highlight: bash bioconductor-sctensor ===================== .. conda:recipe:: bioconductor-sctensor :replaces_section_title: :noindex: Detection of cell\-cell interaction from single\-cell RNA\-seq dataset by tensor decomposition :homepage: https://bioconductor.org/packages/3.18/bioc/html/scTensor.html :license: Artistic-2.0 :recipe: /`bioconductor-sctensor `_/`meta.yaml `_ The algorithm is based on the non\-negative tucker decomposition \(NTD2\) of nnTensor. .. conda:package:: bioconductor-sctensor |downloads_bioconductor-sctensor| |docker_bioconductor-sctensor| :versions: .. raw:: html
2.12.0-02.10.0-02.8.0-02.4.0-02.2.0-02.0.0-12.0.0-01.4.0-01.2.0-0 ``2.12.0-0``,  ``2.10.0-0``,  ``2.8.0-0``,  ``2.4.0-0``,  ``2.2.0-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.12-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0`` :depends bioconductor-category: ``>=2.68.0,<2.69.0`` :depends bioconductor-dose: ``>=3.28.0,<3.29.0`` :depends bioconductor-gostats: ``>=2.68.0,<2.69.0`` :depends bioconductor-meshdbi: ``>=1.38.0,<1.39.0`` :depends bioconductor-meshr: ``>=2.8.0,<2.9.0`` :depends bioconductor-reactome.db: ``>=1.86.0,<1.87.0`` :depends bioconductor-reactomepa: ``>=1.46.0,<1.47.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-schex: ``>=1.16.0,<1.17.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-abind: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: :depends r-cctensor: ``>=1.0.2`` :depends r-checkmate: :depends r-crayon: :depends r-ggplot2: :depends r-heatmaply: :depends r-igraph: :depends r-knitr: :depends r-nntensor: ``>=1.1.5`` :depends r-outliers: :depends r-plotly: :depends r-plotrix: :depends r-rmarkdown: :depends r-rsqlite: :depends r-rtensor: ``>=1.4.8`` :depends r-tagcloud: :depends r-visnetwork: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-sctensor and update with:: mamba update bioconductor-sctensor To create a new environment, run:: mamba create --name myenvname bioconductor-sctensor with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-sctensor: (see `bioconductor-sctensor/tags`_ for valid values for ````) .. |downloads_bioconductor-sctensor| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-sctensor.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-sctensor :alt: (downloads) .. |docker_bioconductor-sctensor| image:: https://quay.io/repository/biocontainers/bioconductor-sctensor/status :target: https://quay.io/repository/biocontainers/bioconductor-sctensor .. _`bioconductor-sctensor/tags`: https://quay.io/repository/biocontainers/bioconductor-sctensor?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sctensor/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-sctensor/README.html