:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-scuttle' .. highlight: bash bioconductor-scuttle ==================== .. conda:recipe:: bioconductor-scuttle :replaces_section_title: :noindex: Single\-Cell RNA\-Seq Analysis Utilities :homepage: https://bioconductor.org/packages/3.14/bioc/html/scuttle.html :license: GPL-3 :recipe: /`bioconductor-scuttle `_/`meta.yaml `_ Provides basic utility functions for performing single\-cell analyses\, focusing on simple normalization\, quality control and data transformations. Also provides some helper functions to assist development of other packages. .. conda:package:: bioconductor-scuttle |downloads_bioconductor-scuttle| |docker_bioconductor-scuttle| :versions: ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.4-0``,  ``1.0.0-0`` :depends bioconductor-beachmat: ``>=2.10.0,<2.11.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-delayedarray: ``>=0.20.0,<0.21.0`` :depends bioconductor-delayedmatrixstats: ``>=1.16.0,<1.17.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-singlecellexperiment: ``>=1.16.0,<1.17.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-matrix: :depends r-rcpp: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-scuttle and update with:: conda update bioconductor-scuttle or use the docker container:: docker pull quay.io/biocontainers/bioconductor-scuttle: (see `bioconductor-scuttle/tags`_ for valid values for ````) .. |downloads_bioconductor-scuttle| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scuttle.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-scuttle :alt: (downloads) .. |docker_bioconductor-scuttle| image:: https://quay.io/repository/biocontainers/bioconductor-scuttle/status :target: https://quay.io/repository/biocontainers/bioconductor-scuttle .. _`bioconductor-scuttle/tags`: https://quay.io/repository/biocontainers/bioconductor-scuttle?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scuttle/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-scuttle/README.html