:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-signaturesearch'
.. highlight: bash

bioconductor-signaturesearch
============================

.. conda:recipe:: bioconductor-signaturesearch
   :replaces_section_title:
   :noindex:

   Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/signatureSearch.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-signaturesearch <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-signaturesearch>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-signaturesearch/meta.yaml>`_

   This package implements algorithms and data structures for performing gene expression signature \(GES\) searches\, and subsequently interpreting the results functionally with specialized enrichment methods.


.. conda:package:: bioconductor-signaturesearch

   |downloads_bioconductor-signaturesearch| |docker_bioconductor-signaturesearch|

   :versions:
      
      

      ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-annotationdbi: ``>=1.50.0,<1.51.0``
   :depends bioconductor-biocparallel: ``>=1.22.0,<1.23.0``
   :depends bioconductor-clusterprofiler: ``>=3.16.0,<3.17.0``
   :depends bioconductor-delayedarray: ``>=0.14.0,<0.15.0``
   :depends bioconductor-dose: ``>=3.14.0,<3.15.0``
   :depends bioconductor-experimenthub: ``>=1.14.0,<1.15.0``
   :depends bioconductor-fgsea: ``>=1.14.0,<1.15.0``
   :depends bioconductor-gseabase: ``>=1.50.0,<1.51.0``
   :depends bioconductor-hdf5array: ``>=1.16.0,<1.17.0``
   :depends bioconductor-qvalue: ``>=2.20.0,<2.21.0``
   :depends bioconductor-rhdf5: ``>=2.32.0,<2.33.0``
   :depends bioconductor-summarizedexperiment: ``>=1.18.0,<1.19.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=7.3.0``
   :depends liblapack: ``>=3.8.0,<3.9.0a0``
   :depends libstdcxx-ng: ``>=7.3.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-data.table: 
   :depends r-dplyr: 
   :depends r-fastmatch: 
   :depends r-ggplot2: 
   :depends r-magrittr: 
   :depends r-matrix: 
   :depends r-rcpp: 
   :depends r-readr: 
   :depends r-reshape2: 
   :depends r-rsqlite: 
   :depends r-scales: 
   :depends r-visnetwork: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-signaturesearch

   and update with::

      conda update bioconductor-signaturesearch

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-signaturesearch:<tag>

   (see `bioconductor-signaturesearch/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-signaturesearch| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-signaturesearch.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-signaturesearch
   :alt:   (downloads)
.. |docker_bioconductor-signaturesearch| image:: https://quay.io/repository/biocontainers/bioconductor-signaturesearch/status
   :target: https://quay.io/repository/biocontainers/bioconductor-signaturesearch
.. _`bioconductor-signaturesearch/tags`: https://quay.io/repository/biocontainers/bioconductor-signaturesearch?tab=tags







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