:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-signaturesearch' .. highlight: bash bioconductor-signaturesearch ============================ .. conda:recipe:: bioconductor-signaturesearch :replaces_section_title: :noindex: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis :homepage: https://bioconductor.org/packages/3.14/bioc/html/signatureSearch.html :license: Artistic-2.0 :recipe: /`bioconductor-signaturesearch `_/`meta.yaml `_ This package implements algorithms and data structures for performing gene expression signature \(GES\) searches\, and subsequently interpreting the results functionally with specialized enrichment methods. .. conda:package:: bioconductor-signaturesearch |downloads_bioconductor-signaturesearch| |docker_bioconductor-signaturesearch| :versions: ``1.8.2-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.3-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-clusterprofiler: ``>=4.2.0,<4.3.0`` :depends bioconductor-delayedarray: ``>=0.20.0,<0.21.0`` :depends bioconductor-dose: ``>=3.20.0,<3.21.0`` :depends bioconductor-experimenthub: ``>=2.2.0,<2.3.0`` :depends bioconductor-fgsea: ``>=1.20.0,<1.21.0`` :depends bioconductor-gseabase: ``>=1.56.0,<1.57.0`` :depends bioconductor-hdf5array: ``>=1.22.0,<1.23.0`` :depends bioconductor-qvalue: ``>=2.26.0,<2.27.0`` :depends bioconductor-reactome.db: ``>=1.77.0,<1.78.0`` :depends bioconductor-rhdf5: ``>=2.38.0,<2.39.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-data.table: :depends r-dplyr: :depends r-fastmatch: :depends r-ggplot2: :depends r-magrittr: :depends r-matrix: :depends r-rcpp: :depends r-readr: :depends r-reshape2: :depends r-rsqlite: :depends r-scales: :depends r-visnetwork: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-signaturesearch and update with:: conda update bioconductor-signaturesearch or use the docker container:: docker pull quay.io/biocontainers/bioconductor-signaturesearch: (see `bioconductor-signaturesearch/tags`_ for valid values for ````) .. |downloads_bioconductor-signaturesearch| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-signaturesearch.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-signaturesearch :alt: (downloads) .. |docker_bioconductor-signaturesearch| image:: https://quay.io/repository/biocontainers/bioconductor-signaturesearch/status :target: https://quay.io/repository/biocontainers/bioconductor-signaturesearch .. _`bioconductor-signaturesearch/tags`: https://quay.io/repository/biocontainers/bioconductor-signaturesearch?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-signaturesearch/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-signaturesearch/README.html