:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-signaturesearchdata' .. highlight: bash bioconductor-signaturesearchdata ================================ .. conda:recipe:: bioconductor-signaturesearchdata :replaces_section_title: :noindex: Datasets for signatureSearch package :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/signatureSearchData.html :license: Artistic-2.0 :recipe: /`bioconductor-signaturesearchdata `_/`meta.yaml `_ CMAP\/LINCS hdf5 databases and other annotations used for signatureSearch software package. .. conda:package:: bioconductor-signaturesearchdata |downloads_bioconductor-signaturesearchdata| |docker_bioconductor-signaturesearchdata| :versions: .. raw:: html
1.16.0-01.14.0-01.12.0-01.8.4-01.8.0-01.6.0-01.4.0-11.4.0-01.2.0-0 ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.8.4-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``0.99.14-1`` .. raw:: html
:depends bioconductor-affy: ``>=1.80.0,<1.81.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-rhdf5: ``>=2.46.0,<2.47.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dplyr: :depends r-magrittr: :depends r-r.utils: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-signaturesearchdata and update with:: mamba update bioconductor-signaturesearchdata To create a new environment, run:: mamba create --name myenvname bioconductor-signaturesearchdata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-signaturesearchdata: (see `bioconductor-signaturesearchdata/tags`_ for valid values for ````) .. |downloads_bioconductor-signaturesearchdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-signaturesearchdata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-signaturesearchdata :alt: (downloads) .. |docker_bioconductor-signaturesearchdata| image:: https://quay.io/repository/biocontainers/bioconductor-signaturesearchdata/status :target: https://quay.io/repository/biocontainers/bioconductor-signaturesearchdata .. _`bioconductor-signaturesearchdata/tags`: https://quay.io/repository/biocontainers/bioconductor-signaturesearchdata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-signaturesearchdata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-signaturesearchdata/README.html