:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-singscore' .. highlight: bash bioconductor-singscore ====================== .. conda:recipe:: bioconductor-singscore :replaces_section_title: :noindex: Rank\-based single\-sample gene set scoring method :homepage: https://bioconductor.org/packages/3.14/bioc/html/singscore.html :license: GPL-3 :recipe: /`bioconductor-singscore `_/`meta.yaml `_ A simple single\-sample gene signature scoring method that uses rank\-based statistics to analyze the sample\'s gene expression profile. It scores the expression activities of gene sets at a single\-sample level. .. conda:package:: bioconductor-singscore |downloads_bioconductor-singscore| |docker_bioconductor-singscore| :versions: ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.2-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-gseabase: ``>=1.56.0,<1.57.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-ggplot2: :depends r-ggrepel: :depends r-magrittr: :depends r-matrixstats: :depends r-plotly: :depends r-plyr: :depends r-rcolorbrewer: :depends r-reshape: :depends r-reshape2: :depends r-tidyr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-singscore and update with:: conda update bioconductor-singscore or use the docker container:: docker pull quay.io/biocontainers/bioconductor-singscore: (see `bioconductor-singscore/tags`_ for valid values for ````) .. |downloads_bioconductor-singscore| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-singscore.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-singscore :alt: (downloads) .. |docker_bioconductor-singscore| image:: https://quay.io/repository/biocontainers/bioconductor-singscore/status :target: https://quay.io/repository/biocontainers/bioconductor-singscore .. _`bioconductor-singscore/tags`: https://quay.io/repository/biocontainers/bioconductor-singscore?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-singscore/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-singscore/README.html